wrf hangs when initiate domain 2

Discuss the nesting capability within the model itself and any problems you might have run into.

wrf hangs when initiate domain 2

Postby Gozoac » Wed Jan 16, 2019 2:06 pm

Dear All,

My trial wrfchem simulation is running fine with the coarse domain (max_dom = 1). However, the wrf executable is hanging when the intermediate and fine domains are introduced (max_dom = 3). I tried also to run the simulation without chemistry namelist. But the wrf executable hung again when initiating domain 2 (intermediate domain). I also tried to run the simulation with different number of cores: 100, 84 and 24 in order to vary the number of grid points per core. But this trick did not solve the issue.

Although the chemistry namelist was excluded as described in the attached namelist, the rsl.error file still printed the following error:

open_aux_u : error opening auxinput5_d01_2015-04-17_00:00:00 for reading. 100



The auxinput_5 parameter was also set to 0,0,0,. But the same error was repeated.



With and without the chemistry namelist, the wrf executable is hanging when initiating domain 2. Is this issue related to the configuration of wrf on our cluster? Or I have some missing parameters in my namelist?



Any guidance would be appreciated.



P.S. My WRF version is 3.8.1



Regards

Martin

Below is my namelist:

&time_control
start_year = 2015, 2015, 2015,
start_month = 04, 04, 04,
start_day = 17, 17, 17,
start_hour = 00, 00, 00,
start_minute = 00, 00, 00,
start_second = 00, 00, 00,
end_year = 2015, 2015, 2015,
end_month = 04, 04, 04,
end_day = 18, 18, 18,
end_hour = 00, 00, 00,
end_minute = 00, 00, 00,
end_second = 00, 00, 00,
interval_seconds = 21600,
input_from_file = .true., .true., .true.,
history_interval = 60, 60, 60,
frames_per_outfile = 1000, 1000, 1000,
restart = .false.,
restart_interval = 5000,
io_form_history = 2,
io_form_restart = 2,
io_form_input = 2,
io_form_boundary = 2,
! auxinput4_inname = 'wrflowinp_d<domain>', ! to add sst data. must also include sst_update = 1 under the &physics namelist
! auxinput4_interval = 21600, 21600, 21600,
! io_form_auxinput4 = 2,
! auxinput5_inname = 'wrfchemi_d<domain>_<date>',
! auxinput5_interval_m = 1440, 1440, 1440,
! frames_per_auxinput5 = 1, 1, 1,
! io_form_auxinput5 = 2,
! auxinput6_inname = 'wrfbiochemi_d<domain>',
! frames_per_auxinput6 = 1, 1, 1,
! io_form_auxinput6 = 2,
! auxinput7_inname = 'wrffirechemi_d<domain>_<date>',
! auxinput7_interval_m = 60, 60, 60,
! frames_per_auxinput7 = 1, 1, 1,
! io_form_auxinput7 = 2,
debug_level = 201,
/

&domains
time_step = 120,
time_step_fract_num = 0,
time_step_fract_den = 1,
max_dom = 3,
s_we = 1, 1, 1,
e_we = 100, 291, 211,
s_sn = 1, 1, 1,
e_sn = 100, 141, 171,
e_vert = 30, 30, 30,
p_top_requested = 5000,
num_metgrid_levels = 27,
num_metgrid_soil_levels = 4,
dx = 75000, 15000, 3000,
dy = 75000, 15000, 3000,
grid_id = 1, 2, 3,
parent_id = 1, 1, 2,
i_parent_start = 1, 10, 115,
j_parent_start = 1, 39, 42,
parent_grid_ratio = 1, 5, 5,
parent_time_step_ratio = 1, 5, 5,
feedback = 1,
smooth_option = 0
/

&physics
mp_physics = 10, 10, 10,
progn = 1,
naer = 1e9
ra_lw_physics = 1, 1, 1,
ra_sw_physics = 2, 2, 2,
radt = 25, 25, 25,
sf_sfclay_physics = 1, 1, 1,
sf_surface_physics = 1, 1, 1,
sf_urban_physics = 0, 0, 0,
bl_pbl_physics = 5, 5, 5,
bldt = 0, 0, 0,
cu_physics = 5, 5, 5,
cudt = 1, 1, 1,
isfflx = 1,
ifsnow = 1,
icloud = 1,
surface_input_source = 3,
num_soil_layers = 5,
num_land_cat = 21,
mfshconv = 0,
o3input = 0,
sst_update = 0,
traj_opt = 0,
! num_traj = 0,
maxiens = 1,
maxens = 3,
maxens2 = 3,
maxens3 = 16,
ensdim = 144,
cu_rad_feedback = .true., .true., .true.,
cu_diag = 1, 1, 1,
/

&fdda
/

&dynamics
w_damping = 1,
diff_opt = 1, 1, 1,
km_opt = 4, 4, 4,
diff_6th_opt = 0, 0, 0,
diff_6th_factor = 0.12, 0.12, 0.12,
base_temp = 290.
damp_opt = 0,
zdamp = 5000., 5000., 5000.,
dampcoef = 0.2, 0.2, 0.2
khdif = 0, 0, 0,
kvdif = 0, 0, 0,
non_hydrostatic = .true., .true., .true.,
moist_adv_opt = 1, 1, 1,
scalar_adv_opt = 1, 1, 1,
chem_adv_opt = 1, 1, 1,
/

&bdy_control
spec_bdy_width = 5,
spec_zone = 1,
relax_zone = 4,
specified = .true., .false.,.false.,
nested = .false., .true., .true.,
/

&grib2
/

! &chem
! kemit = 1,
! chem_opt = 201, 201, 201,
! chem_in_opt = 1, 1, 1,
! bioemdt = 30, 30, 30,
! photdt = 30, 30, 30,
! chemdt = 2.0, 2.0, 2.0,
! io_style_emissions = 2,
! emiss_inpt_opt = 101, 101, 101,
! emiss_opt = 10, 10, 10,
! phot_opt = 1, 1, 1,
! gas_drydep_opt = 1, 1, 1,
! aer_drydep_opt = 1, 1, 1,
! bio_emiss_opt = 1, 1, 1,
! dust_opt = 3,
! dmsemis_opt = 0,
! seas_opt = 2,
! gas_bc_opt = 1, 1, 1,
! gas_ic_opt = 1, 1, 1,
! aer_bc_opt = 1, 1, 1,
! aer_ic_opt = 1, 1, 1,
! gaschem_onoff = 1, 1, 1,
! aerchem_onoff = 1, 1, 1,
! wetscav_onoff = 1, 1, 1,
! cldchem_onoff = 0, 0, 0,
! vertmix_onoff = 1, 1, 1,
! chem_conv_tr = 1, 1, 1,
! conv_tr_wetscav = 1,
! conv_tr_aqchem = 0,
! biomass_burn_opt = 2, 2, 2,
! plumerisefire_frq = 30, 30, 30,
! scale_fire_emiss = .true., .true., .true.,
! aer_ra_feedback = 1, 1, 1,
! have_bcs_chem = .false., .false., .false.,
! n2o5_hetchem = 1,
! opt_pars_out = 1,
! have_bcs_upper = .false., .false., .false.,
! fixed_ubc_press = 50.,
! fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc',
! chemdiag = 1,
/

&namelist_quilt
nio_tasks_per_group = 0,
nio_groups = 1,
/



Below is my rsl.error file:
taskid: 0 hostname: node009
module_io_quilt_old.F 2931 F
Quilting with 1 groups of 0 I/O tasks.
Ntasks in X 10 , ntasks in Y 10
--- WARNING: traj_opt is zero, but num_traj is not zero; setting num_traj to zero.
--- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval = 0 for all domains
--- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval = 0 for all domains
--- NOTE: sst_update is 0, setting io_form_auxinput4 = 0 and auxinput4_interval = 0 for all domains
--- NOTE: grid_fdda is 0 for domain 1, setting gfdda interval and ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 1, setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 1, setting obs nudging interval and ending time to 0 for that domain.
--- NOTE: grid_fdda is 0 for domain 2, setting gfdda interval and ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 2, setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 2, setting obs nudging interval and ending time to 0 for that domain.
--- NOTE: grid_fdda is 0 for domain 3, setting gfdda interval and ending time to 0 for that domain.
--- NOTE: both grid_sfdda and pxlsm_soil_nudge are 0 for domain 3, setting sgfdda interval and ending time to 0 for that domain.
--- NOTE: obs_nudge_opt is 0 for domain 3, setting obs nudging interval and ending time to 0 for that domain.
--- NOTE: bl_pbl_physics /= 4, implies mfshconv must be 0, resetting
--- WARNING: Turning on cu_rad_feedback also requires setting cu_diag== 1
--- WARNING: Turning on cu_rad_feedback also requires setting cu_diag== 1
--- WARNING: Turning on cu_rad_feedback also requires setting cu_diag== 1
--- NOTE: RRTMG radiation is not used, setting: o3input=0 to avoid data pre-processing
--- NOTE: num_soil_layers has been set to 5
WRF V3.8.1 MODEL
wrf: calling alloc_and_configure_domain
*************************************
Parent domain
ids,ide,jds,jde 1 100 1 100
ims,ime,jms,jme -4 17 -4 17
ips,ipe,jps,jpe 1 10 1 10
*************************************
DYNAMICS OPTION: Eulerian Mass Coordinate
alloc_space_field: domain 1 , 67669668 bytes allocated
wrf: calling model_to_grid_config_rec
wrf: calling set_scalar_indices_from_config
wrf: calling init_wrfio
Entering ext_gr1_ioinit
DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:002:000]
DEBUG setup_timekeeping(): clock after creation, clock start time = 2015-04-17_00:00:00
DEBUG setup_timekeeping(): clock after creation, clock current time = 2015-04-17_00:00:00
DEBUG setup_timekeeping(): clock after creation, clock stop time = 2015-04-18_00:00:00
DEBUG setup_timekeeping(): clock after creation, clock time step = 0000000000_000:002:000
setup_timekeeping: set xtime to 0.00000000
setup_timekeeping: set julian to 106.000000
setup_timekeeping: returning...
wrf main: calling open_r_dataset for wrfinput
DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
med_initialdata_input: calling input_input
mminlu = 'MODIFIED_IGBP_MODIS_NOAH'
DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:002:000]
DEBUG input_wrf(): get CurrTime from clock, clock start time = 2015-04-17_00:00:00
DEBUG input_wrf(): get CurrTime from clock, clock current time = 2015-04-17_00:00:00
DEBUG input_wrf(): get CurrTime from clock, clock stop time = 2015-04-18_00:00:00
DEBUG input_wrf(): get CurrTime from clock, clock time step = 0000000000_000:002:000
med_initialdata_input: back from input_input
Timing for processing wrfinput file (stream 0) for domain 1: 109.43731 elapsed seconds
checking boundary conditions for grid
boundary conditions OK for grid
Max map factor in domain 1 = 1.21. Scale the dt in the model accordingly.
DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:002:000]
DEBUG domain_setgmtetc(): get simStartTime from clock, clock start time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock current time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock stop time = 2015-04-18_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock time step = 0000000000_000:002:000
DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
DEBUG domain_setgmtetc(): simulation start time = [2015-04-17_00:00:00]
DEBUG domain_setgmtetc(): julyr,hr,mn,sec,ms,julday = 2015 0 0 0 0 107
DEBUG domain_setgmtetc(): gmt = 0.00000000
start_domain_em: Before call to phy_init
WRF TILE 1 IS 1 IE 10 JS 1 JE 10
set_tiles3: NUMBER OF TILES = 1
top of phy_init
phy_init: start_of_simulation = T
calling nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
after nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
module_start: phy_init: Before call to landuse_init
top of landuse_init
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
returning from of landuse_init
module_start: phy_init: Before call to ra_init
module_start: phy_init: Before call to bl_init
module_start: phy_init: Before call to cu_init
module_start: phy_init: Before call to shcu_init
module_start: phy_init: Before call to mp_init
module_start: phy_init: Before call to fg_init
module_start: phy_init: Before call to fdob_init
start_domain_em: After call to phy_init
start_em: calling lightning_init
start_em: after calling lightning_init
calling inc/HALO_EM_INIT_1_inline.inc
calling inc/HALO_EM_INIT_2_inline.inc
calling inc/HALO_EM_INIT_3_inline.inc
calling inc/HALO_EM_INIT_4_inline.inc
calling inc/HALO_EM_INIT_5_inline.inc
calling inc/PERIOD_BDY_EM_INIT_inline.inc
calling inc/PERIOD_BDY_EM_MOIST_inline.inc
calling inc/PERIOD_BDY_EM_TKE_inline.inc
calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
calling inc/PERIOD_BDY_EM_CHEM_inline.inc
*********************************************************************
* PROGRAM:WRF/CHEM V3.8.1 MODEL
* *
* PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at *
* *
* wrfchemhelp.gsd@noaa.gov *
* *
*********************************************************************
calling biomass burning
calling inc/HALO_EM_INIT_1_inline.inc
calling inc/HALO_EM_INIT_2_inline.inc
calling inc/HALO_EM_INIT_3_inline.inc
calling inc/HALO_EM_INIT_4_inline.inc
calling inc/HALO_EM_INIT_5_inline.inc
calling inc/PERIOD_BDY_EM_INIT_inline.inc
calling inc/PERIOD_BDY_EM_MOIST_inline.inc
calling inc/PERIOD_BDY_EM_TKE_inline.inc
calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
calling inc/PERIOD_BDY_EM_CHEM_inline.inc
start_domain_em: Returning
wrf: calling integrate
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:002:000]
DEBUG: top of integrate(), clock start time = 2015-04-17_00:00:00
DEBUG: top of integrate(), clock current time = 2015-04-17_00:00:00
DEBUG: top of integrate(), clock stop time = 2015-04-18_00:00:00
DEBUG: top of integrate(), clock time step = 0000000000_000:002:000
*************************************
Nesting domain
ids,ide,jds,jde 1 291 1 141
ims,ime,jms,jme -4 40 -4 25
ips,ipe,jps,jpe 1 29 1 14
INTERMEDIATE domain
ids,ide,jds,jde 8 71 37 70
ims,ime,jms,jme 3 25 32 51
ips,ipe,jps,jpe 6 15 35 41
*************************************
d01 2015-04-17_00:00:00 alloc_space_field: domain 2 , 4743520 bytes allocated
d01 2015-04-17_00:00:00 alloc_space_field: domain 2 , 184559212 bytes allocated
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:000:024]
DEBUG setup_timekeeping(): clock after creation, clock start time = 2015-04-17_00:00:00
DEBUG setup_timekeeping(): clock after creation, clock current time = 2015-04-17_00:00:00
DEBUG setup_timekeeping(): clock after creation, clock stop time = 2015-04-18_00:00:00
DEBUG setup_timekeeping(): clock after creation, clock time step = 0000000000_000:000:024
d01 2015-04-17_00:00:00 setup_timekeeping: set xtime to 0.00000000
d01 2015-04-17_00:00:00 setup_timekeeping: set julian to 106.000000
d01 2015-04-17_00:00:00 setup_timekeeping: returning...
d01 2015-04-17_00:00:00 calling inc/HALO_INTERP_DOWN_inline.inc
d01 2015-04-17_00:00:00 *** Initializing nest domain # 2 from an input file. ***
d01 2015-04-17_00:00:00 wrf main: calling open_r_dataset for wrfinput
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 med_initialdata_input: calling input_input
d01 2015-04-17_00:00:00 mminlu = 'MODIFIED_IGBP_MODIS_NOAH'
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:000:024]
DEBUG input_wrf(): get CurrTime from clock, clock start time = 2015-04-17_00:00:00
DEBUG input_wrf(): get CurrTime from clock, clock current time = 2015-04-17_00:00:00
DEBUG input_wrf(): get CurrTime from clock, clock stop time = 2015-04-18_00:00:00
DEBUG input_wrf(): get CurrTime from clock, clock time step = 0000000000_000:000:024
d01 2015-04-17_00:00:00 med_initialdata_input: back from input_input
Timing for processing wrfinput file (stream 0) for domain 2: 84.46330 elapsed seconds
d01 2015-04-17_00:00:00 checking boundary conditions for grid
d01 2015-04-17_00:00:00 boundary conditions OK for grid
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:000:024]
DEBUG domain_setgmtetc(): get simStartTime from clock, clock start time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock current time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock stop time = 2015-04-18_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock time step = 0000000000_000:000:024
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): simulation start time = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): julyr,hr,mn,sec,ms,julday = 2015 0 0 0 0 107
d01 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): gmt = 0.00000000
d01 2015-04-17_00:00:00 start_domain_em: Before call to phy_init
d01 2015-04-17_00:00:00 WRF TILE 1 IS 1 IE 29 JS 1 JE 14
d01 2015-04-17_00:00:00 set_tiles3: NUMBER OF TILES = 1
d01 2015-04-17_00:00:00 top of phy_init
d01 2015-04-17_00:00:00 phy_init: start_of_simulation = T
d01 2015-04-17_00:00:00 calling nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
d01 2015-04-17_00:00:00 after nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to landuse_init
d01 2015-04-17_00:00:00 top of landuse_init
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
d01 2015-04-17_00:00:00 returning from of landuse_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to ra_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to bl_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to cu_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to shcu_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to mp_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to fg_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to fdob_init
d01 2015-04-17_00:00:00 start_domain_em: After call to phy_init
d01 2015-04-17_00:00:00 start_em: calling lightning_init
d01 2015-04-17_00:00:00 start_em: after calling lightning_init
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_1_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_2_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_3_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_4_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_INIT_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TKE_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM_inline.inc
*********************************************************************
* PROGRAM:WRF/CHEM V3.8.1 MODEL
* *
* PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at *
* *
* wrfchemhelp.gsd@noaa.gov *
* *
*********************************************************************
d01 2015-04-17_00:00:00 calling biomass burning
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_1_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_2_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_3_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_4_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_INIT_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TKE_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM_inline.inc
d01 2015-04-17_00:00:00 start_domain_em: Returning
d01 2015-04-17_00:00:00 calling inc/HALO_INTERP_UP_inline.inc
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 calling inc/HALO_INTERP_UP_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_FEEDBACK_inline.inc
d01 2015-04-17_00:00:00 checking boundary conditions for grid
d01 2015-04-17_00:00:00 boundary conditions OK for grid
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:000:024]
DEBUG domain_setgmtetc(): get simStartTime from clock, clock start time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock current time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock stop time = 2015-04-18_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock time step = 0000000000_000:000:024
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): simulation start time = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): julyr,hr,mn,sec,ms,julday = 2015 0 0 0 0 107
d01 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): gmt = 0.00000000
d01 2015-04-17_00:00:00 start_domain_em: Before call to phy_init
d01 2015-04-17_00:00:00 WRF TILE 1 IS 1 IE 29 JS 1 JE 14
d01 2015-04-17_00:00:00 set_tiles3: NUMBER OF TILES = 1
d01 2015-04-17_00:00:00 top of phy_init
d01 2015-04-17_00:00:00 phy_init: start_of_simulation = T
d01 2015-04-17_00:00:00 calling nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
d01 2015-04-17_00:00:00 after nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to landuse_init
d01 2015-04-17_00:00:00 top of landuse_init
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
d01 2015-04-17_00:00:00 returning from of landuse_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to ra_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to bl_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to cu_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to shcu_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to mp_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to fg_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to fdob_init
d01 2015-04-17_00:00:00 start_domain_em: After call to phy_init
d01 2015-04-17_00:00:00 start_em: calling lightning_init
d01 2015-04-17_00:00:00 start_em: after calling lightning_init
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_1_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_2_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_3_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_4_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_INIT_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TKE_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM_inline.inc
*********************************************************************
* PROGRAM:WRF/CHEM V3.8.1 MODEL
* *
* PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at *
* *
* wrfchemhelp.gsd@noaa.gov *
* *
*********************************************************************
d01 2015-04-17_00:00:00 calling biomass burning
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_1_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_2_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_3_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_4_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_INIT_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TKE_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM_inline.inc
d01 2015-04-17_00:00:00 start_domain_em: Returning
d01 2015-04-17_00:00:00 checking boundary conditions for grid
d01 2015-04-17_00:00:00 boundary conditions OK for grid
Max map factor in domain 1 = 1.21. Scale the dt in the model accordingly.
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:002:000]
DEBUG domain_setgmtetc(): get simStartTime from clock, clock start time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock current time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock stop time = 2015-04-18_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock time step = 0000000000_000:002:000
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): simulation start time = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): julyr,hr,mn,sec,ms,julday = 2015 0 0 0 0 107
d01 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): gmt = 0.00000000
d01 2015-04-17_00:00:00 start_domain_em: Before call to phy_init
d01 2015-04-17_00:00:00 WRF TILE 1 IS 1 IE 10 JS 1 JE 10
d01 2015-04-17_00:00:00 set_tiles3: NUMBER OF TILES = 1
d01 2015-04-17_00:00:00 top of phy_init
d01 2015-04-17_00:00:00 phy_init: start_of_simulation = T
d01 2015-04-17_00:00:00 calling nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
d01 2015-04-17_00:00:00 after nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to landuse_init
d01 2015-04-17_00:00:00 top of landuse_init
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
d01 2015-04-17_00:00:00 returning from of landuse_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to ra_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to bl_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to cu_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to shcu_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to mp_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to fg_init
d01 2015-04-17_00:00:00 module_start: phy_init: Before call to fdob_init
d01 2015-04-17_00:00:00 start_domain_em: After call to phy_init
d01 2015-04-17_00:00:00 start_em: calling lightning_init
d01 2015-04-17_00:00:00 start_em: after calling lightning_init
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_1_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_2_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_3_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_4_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_INIT_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TKE_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM_inline.inc
*********************************************************************
* PROGRAM:WRF/CHEM V3.8.1 MODEL
* *
* PLEASE REPORT ANY BUGS TO WRF/CHEM HELP at *
* *
* wrfchemhelp.gsd@noaa.gov *
* *
*********************************************************************
d01 2015-04-17_00:00:00 calling biomass burning
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_1_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_2_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_3_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_4_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_INIT_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_INIT_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TKE_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM_inline.inc
d01 2015-04-17_00:00:00 start_domain_em: Returning
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 open_hist_w : opening wrfout_d01_2015-04-17_00:00:00 for writing.
d01 2015-04-17_00:00:00 calling wrf_open_for_write_begin in open_w_dataset
d01 2015-04-17_00:00:00 module_io.F: in wrf_open_for_write_begin, FileName = wrfout_d01_2015-04-17_00:00:00
d01 2015-04-17_00:00:00 calling outsub in open_w_dataset
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:002:000]
DEBUG output_wrf(): before call to domain_clock_get, clock start time = 2015-04-17_00:00:00
DEBUG output_wrf(): before call to domain_clock_get, clock current time = 2015-04-17_00:00:00
DEBUG output_wrf(): before call to domain_clock_get, clock stop time = 2015-04-18_00:00:00
DEBUG output_wrf(): before call to domain_clock_get, clock time step = 0000000000_000:002:000
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 back from outsub in open_w_dataset
d01 2015-04-17_00:00:00 calling wrf_open_for_write_commit in open_w_dataset
d01 2015-04-17_00:00:00 Information: NOFILL being set for writing to wrfout_d01_2015-04-17_00:00:00
d01 2015-04-17_00:00:00 back from wrf_open_for_write_commit in open_w_dataset
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d01 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:002:000]
DEBUG output_wrf(): before call to domain_clock_get, clock start time = 2015-04-17_00:00:00
DEBUG output_wrf(): before call to domain_clock_get, clock current time = 2015-04-17_00:00:00
DEBUG output_wrf(): before call to domain_clock_get, clock stop time = 2015-04-18_00:00:00
DEBUG output_wrf(): before call to domain_clock_get, clock time step = 0000000000_000:002:000
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 med_hist_out: opened wrfout_d01_2015-04-17_00:00:00 as DATASET=HISTORY
Timing for Writing wrfout_d01_2015-04-17_00:00:00 for domain 1: 192.01682 elapsed seconds
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 open_aux_u : opening auxinput5_d01_2015-04-17_00:00:00 for reading. DATASET DATASET=AUXINPUT5
d01 2015-04-17_00:00:00 calling wrf_open_for_read_begin in open_u_dataset
open_aux_u : error opening auxinput5_d01_2015-04-17_00:00:00 for reading. 100
d01 2015-04-17_00:00:00 Input data processed for aux input 5 for domain 1
d01 2015-04-17_00:00:00 in med_latbound_in
d01 2015-04-17_00:00:00 in med_latbound_in preparing to read
d01 2015-04-17_00:00:00 Opening: wrfbdy_d01
d01 2015-04-17_00:00:00 med_latbound_in: calling input_boundary
d01 2015-04-17_00:00:00 mminlu = 'MODIFIED_IGBP_MODIS_NOAH'
Timing for processing lateral boundary for domain 1: 118.88350 elapsed seconds
d01 2015-04-17_00:00:00 module_integrate: calling solve interface
Tile Strategy is not specified. Assuming 1D-Y
WRF TILE 1 IS 1 IE 10 JS 1 JE 10
WRF NUMBER OF TILES = 1
d01 2015-04-17_00:00:00 grid spacing, dt, time_step_sound= 75000.0000 120.000000 4
d01 2015-04-17_00:00:00 call rk_step_prep
d01 2015-04-17_00:00:00 calling inc/HALO_EM_A_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_A_inline.inc
d01 2015-04-17_00:00:00 call rk_phys_bc_dry_1
d01 2015-04-17_00:00:00 call init_zero_tendency
d01 2015-04-17_00:00:00 calling inc/HALO_EM_PHYS_A_inline.inc
d01 2015-04-17_00:00:00 call phy_prep
d01 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d01 2015-04-17_00:00:00 call radiation_driver
d01 2015-04-17_00:00:00 Top of Radiation Driver
d01 2015-04-17_00:00:00 CALL cldfra1
d01 2015-04-17_00:00:00 in rad driver; use BL clouds
d01 2015-04-17_00:00:00 Have o3rad
d01 2015-04-17_00:00:00 CALL rrtm
d01 2015-04-17_00:00:00 CAM-CLWRF interpolated values______ year: 2015 julian day: 106.000000
d01 2015-04-17_00:00:00 CAM-CLWRF co2vmr: 3.7900000461377203E-004 n2ovmr: 3.1900000863060995E-007 ch4vmr: 1.7739999975674436E-006
d01 2015-04-17_00:00:00 CALL gsfcswrad
d01 2015-04-17_00:00:00 calling inc/HALO_PWP_inline.inc
d01 2015-04-17_00:00:00 call surface_driver
d01 2015-04-17_00:00:00 in SFCLAY
d01 2015-04-17_00:00:00 in SLAB
d01 2015-04-17_00:00:00 in SFCDIAGS
d01 2015-04-17_00:00:00 call pbl_driver
d01 2015-04-17_00:00:00 in MYNNPBL
d01 2015-04-17_00:00:00 call cumulus_driver
d01 2015-04-17_00:00:00 calling inc/HALO_CUP_G3_IN_inline.inc
d01 2015-04-17_00:00:00 in grelldrv
d01 2015-04-17_00:00:00 calling inc/HALO_CUP_G3_OUT_inline.inc
d01 2015-04-17_00:00:00 returning from cumulus_driver
d01 2015-04-17_00:00:00 call shallow_cumulus_driver
d01 2015-04-17_00:00:00 calling inc/HALO_EM_FDDA_SFC_inline.inc
d01 2015-04-17_00:00:00 call fddagd_driver
d01 2015-04-17_00:00:00 calling inc/HALO_EM_SCALAR_E_5_inline.inc
d01 2015-04-17_00:00:00 call calculate_phy_tend
d01 2015-04-17_00:00:00 call compute_diff_metrics
d01 2015-04-17_00:00:00 calling inc/HALO_EM_TKE_C_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_A1_inline.inc
d01 2015-04-17_00:00:00 call bc for diffusion_metrics
d01 2015-04-17_00:00:00 call cal_deform_and_div
d01 2015-04-17_00:00:00 calling inc/HALO_EM_HELICITY_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_TKE_D_inline.inc
d01 2015-04-17_00:00:00 call calculate_km_kh
d01 2015-04-17_00:00:00 calling inc/HALO_EM_TKE_E_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_PHY_BC_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM_inline.inc
d01 2015-04-17_00:00:00 call phy_bc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_PHYS_PBL_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_PHYS_DIFFUSION_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_TKE_5_inline.inc
d01 2015-04-17_00:00:00 call update_phy_ten
d01 2015-04-17_00:00:00 call rk_tendency
d01 2015-04-17_00:00:00 call small_step_prep
d01 2015-04-17_00:00:00 calling inc/HALO_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B3_inline.inc
d01 2015-04-17_00:00:00 call rk_small_finish
d01 2015-04-17_00:00:00 calling inc/HALO_EM_D_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_EM_DA_inline.inc
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 calling inc/HALO_EM_D2_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_D_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TRACER2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR2_inline.inc
d01 2015-04-17_00:00:00 call rk_phys_bc_dry_2
d01 2015-04-17_00:00:00 calling inc/HALO_EM_TKE_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_MOIST_E_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_SCALAR_E_5_inline.inc
d01 2015-04-17_00:00:00 call rk_step_prep
d01 2015-04-17_00:00:00 calling inc/HALO_EM_A_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_A_inline.inc
d01 2015-04-17_00:00:00 call rk_phys_bc_dry_1
d01 2015-04-17_00:00:00 call rk_tendency
d01 2015-04-17_00:00:00 call small_step_prep
d01 2015-04-17_00:00:00 calling inc/HALO_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B3_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B3_inline.inc
d01 2015-04-17_00:00:00 call rk_small_finish
d01 2015-04-17_00:00:00 calling inc/HALO_EM_D_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_EM_DA_inline.inc
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 calling inc/HALO_EM_D2_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_D_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TRACER2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR2_inline.inc
d01 2015-04-17_00:00:00 call rk_phys_bc_dry_2
d01 2015-04-17_00:00:00 calling inc/HALO_EM_TKE_7_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_MOIST_E_7_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_SCALAR_E_7_inline.inc
d01 2015-04-17_00:00:00 call rk_step_prep
d01 2015-04-17_00:00:00 calling inc/HALO_EM_A_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_A_inline.inc
d01 2015-04-17_00:00:00 call rk_phys_bc_dry_1
d01 2015-04-17_00:00:00 call rk_tendency
d01 2015-04-17_00:00:00 call small_step_prep
d01 2015-04-17_00:00:00 calling inc/HALO_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B3_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B3_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B3_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C2_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_B3_inline.inc
d01 2015-04-17_00:00:00 call rk_small_finish
d01 2015-04-17_00:00:00 call rk_update_scalar_pd
d01 2015-04-17_00:00:00 calling inc/HALO_EM_MOIST_OLD_E_7_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST_OLD_inline.inc
d01 2015-04-17_00:00:00 call rk_update_scalar_pd
d01 2015-04-17_00:00:00 calling inc/HALO_EM_SCALAR_OLD_E_7_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR_OLD_inline.inc
d01 2015-04-17_00:00:00 call rk_update_scalar_pd
d01 2015-04-17_00:00:00 calling inc/HALO_EM_CHEM_OLD_E_7_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM_OLD_inline.inc
d01 2015-04-17_00:00:00 call rk_update_scalar_pd
d01 2015-04-17_00:00:00 calling inc/HALO_EM_TRACER_OLD_E_7_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TRACER_OLD_inline.inc
d01 2015-04-17_00:00:00 calling inc/HALO_EM_D_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_EM_DA_inline.inc
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call rk_scalar_tend
d01 2015-04-17_00:00:00 call rk_update_scalar
d01 2015-04-17_00:00:00 call advance_ppt
d01 2015-04-17_00:00:00 call moist_physics_prep
d01 2015-04-17_00:00:00 call microphysics_driver
d01 2015-04-17_00:00:00 calling inc/HALO_EM_SBM_inline.inc
d01 2015-04-17_00:00:00 microphysics_driver: calling prescribe_aerosol_mixactivate
d01 2015-04-17_00:00:00 microphysics_driver: calling morrison two moment
d01 2015-04-17_00:00:00 microphysics_driver: returning from
d01 2015-04-17_00:00:00 call moist_physics_finish
d01 2015-04-17_00:00:00 call chem polar filter
d01 2015-04-17_00:00:00 calling inc/HALO_EM_D3_5_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_D3_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_MOIST_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_CHEM_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_TRACER_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
d01 2015-04-17_00:00:00 call set_phys_bc_dry_2
d01 2015-04-17_00:00:00 call spec_bdy_final
d01 2015-04-17_00:00:00 calling inc/HALO_EM_C_inline.inc
d01 2015-04-17_00:00:00 calling inc/PERIOD_BDY_EM_E_inline.inc
d01 2015-04-17_00:00:00 call set_w_surface
d01 2015-04-17_00:00:00 calling inc/HALO_EM_PHYS_W_inline.inc
d01 2015-04-17_00:00:00 --> TOP OF AFTER ALL RK STEPS
d01 2015-04-17_00:00:00 --> CALLING DIAGNOSTICS DRIVER
d01 2015-04-17_00:00:00 --> TOP OF DIAGNOSTICS PACKAGE
d01 2015-04-17_00:00:00 --> CALL DIAGNOSTICS PACKAGE: NWP DIAGNOSTICS
d01 2015-04-17_00:00:00 call HALO_RK_E
d01 2015-04-17_00:00:00 calling inc/HALO_EM_E_5_inline.inc
d01 2015-04-17_00:00:00 call HALO_RK_MOIST
d01 2015-04-17_00:00:00 calling inc/HALO_EM_MOIST_E_5_inline.inc
d01 2015-04-17_00:00:00 call HALO_RK_SCALAR
d01 2015-04-17_00:00:00 calling inc/HALO_EM_SCALAR_E_5_inline.inc
d01 2015-04-17_00:00:00 call end of solve_em
d01 2015-04-17_00:02:00 module_integrate: back from solve interface
d02 2015-04-17_00:00:00 module_integrate: calling med_nest_force
d02 2015-04-17_00:00:00 calling inc/HALO_EM_COUPLE_A_inline.inc
d02 2015-04-17_00:00:00 calling inc/PERIOD_EM_COUPLE_A_inline.inc
d02 2015-04-17_00:00:00 calling inc/HALO_EM_COUPLE_B_inline.inc
d02 2015-04-17_00:00:00 calling inc/PERIOD_EM_COUPLE_B_inline.inc
d02 2015-04-17_00:00:00 calling inc/HALO_EM_COUPLE_A_inline.inc
d02 2015-04-17_00:00:00 calling inc/PERIOD_EM_COUPLE_A_inline.inc
d02 2015-04-17_00:00:00 calling inc/HALO_EM_COUPLE_B_inline.inc
d02 2015-04-17_00:00:00 calling inc/PERIOD_EM_COUPLE_B_inline.inc
d02 2015-04-17_00:00:00 calling inc/HALO_FORCE_DOWN_inline.inc
d02 2015-04-17_00:00:00 calling inc/HALO_EM_COUPLE_A_inline.inc
d02 2015-04-17_00:00:00 calling inc/PERIOD_EM_COUPLE_A_inline.inc
d02 2015-04-17_00:00:00 calling inc/HALO_EM_COUPLE_B_inline.inc
d02 2015-04-17_00:00:00 calling inc/PERIOD_EM_COUPLE_B_inline.inc
d02 2015-04-17_00:00:00 calling inc/HALO_EM_COUPLE_A_inline.inc
d02 2015-04-17_00:00:00 calling inc/PERIOD_EM_COUPLE_A_inline.inc
d02 2015-04-17_00:00:00 calling inc/HALO_EM_COUPLE_B_inline.inc
d02 2015-04-17_00:00:00 calling inc/PERIOD_EM_COUPLE_B_inline.inc
d02 2015-04-17_00:00:00 module_integrate: back from med_nest_force
d02 2015-04-17_00:00:00 1 module_integrate: recursive call to integrate
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:000:024]
DEBUG: top of integrate(), clock start time = 2015-04-17_00:00:00
DEBUG: top of integrate(), clock current time = 2015-04-17_00:00:00
DEBUG: top of integrate(), clock stop time = 2015-04-18_00:00:00
DEBUG: top of integrate(), clock time step = 0000000000_000:000:024
*************************************
Nesting domain
ids,ide,jds,jde 1 211 1 171
ims,ime,jms,jme -4 35 -4 30
ips,ipe,jps,jpe 1 21 1 17
INTERMEDIATE domain
ids,ide,jds,jde 113 160 40 79
ims,ime,jms,jme 108 128 35 55
ips,ipe,jps,jpe 111 118 38 45
*************************************
d02 2015-04-17_00:00:00 alloc_space_field: domain 3 , 4547592 bytes allocated
d02 2015-04-17_00:00:00 alloc_space_field: domain 3 , 191224168 bytes allocated
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:000:004]
DEBUG setup_timekeeping(): clock after creation, clock start time = 2015-04-17_00:00:00
DEBUG setup_timekeeping(): clock after creation, clock current time = 2015-04-17_00:00:00
DEBUG setup_timekeeping(): clock after creation, clock stop time = 2015-04-18_00:00:00
DEBUG setup_timekeeping(): clock after creation, clock time step = 0000000000_000:000:004
d02 2015-04-17_00:00:00 setup_timekeeping: set xtime to 0.00000000
d02 2015-04-17_00:00:00 setup_timekeeping: set julian to 106.000000
d02 2015-04-17_00:00:00 setup_timekeeping: returning...
d02 2015-04-17_00:00:00 calling inc/HALO_INTERP_DOWN_inline.inc
d02 2015-04-17_00:00:00 *** Initializing nest domain # 3 from an input file. ***
d02 2015-04-17_00:00:00 wrf main: calling open_r_dataset for wrfinput
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 med_initialdata_input: calling input_input
d02 2015-04-17_00:00:00 mminlu = 'MODIFIED_IGBP_MODIS_NOAH'
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:000:004]
DEBUG input_wrf(): get CurrTime from clock, clock start time = 2015-04-17_00:00:00
DEBUG input_wrf(): get CurrTime from clock, clock current time = 2015-04-17_00:00:00
DEBUG input_wrf(): get CurrTime from clock, clock stop time = 2015-04-18_00:00:00
DEBUG input_wrf(): get CurrTime from clock, clock time step = 0000000000_000:000:004
d02 2015-04-17_00:00:00 med_initialdata_input: back from input_input
Timing for processing wrfinput file (stream 0) for domain 3: 127.19334 elapsed seconds
d02 2015-04-17_00:00:00 checking boundary conditions for grid
d02 2015-04-17_00:00:00 boundary conditions OK for grid
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-18_00:00:00]
d02 2015-04-17_00:00:00 DEBUG wrf_timeinttoa(): returning with str = [0000000000_000:000:004]
DEBUG domain_setgmtetc(): get simStartTime from clock, clock start time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock current time = 2015-04-17_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock stop time = 2015-04-18_00:00:00
DEBUG domain_setgmtetc(): get simStartTime from clock, clock time step = 0000000000_000:000:004
d02 2015-04-17_00:00:00 DEBUG wrf_timetoa(): returning with str = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): simulation start time = [2015-04-17_00:00:00]
d02 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): julyr,hr,mn,sec,ms,julday = 2015 0 0 0 0 107
d02 2015-04-17_00:00:00 DEBUG domain_setgmtetc(): gmt = 0.00000000
d02 2015-04-17_00:00:00 start_domain_em: Before call to phy_init
d02 2015-04-17_00:00:00 WRF TILE 1 IS 1 IE 21 JS 1 JE 17
d02 2015-04-17_00:00:00 set_tiles3: NUMBER OF TILES = 1
d02 2015-04-17_00:00:00 top of phy_init
d02 2015-04-17_00:00:00 phy_init: start_of_simulation = T
d02 2015-04-17_00:00:00 calling nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
d02 2015-04-17_00:00:00 after nl_get_iswater, nl_get_isice, nl_get_mminlu_loc
d02 2015-04-17_00:00:00 module_start: phy_init: Before call to landuse_init
d02 2015-04-17_00:00:00 top of landuse_init
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
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