HWRF run strop without any error

Any issues with the actual running of the WRF.

HWRF run strop without any error

Postby pegahfar_naf » Mon Oct 01, 2018 7:01 am

I installed HWRF model.
When I try to run the test data (MATHEW TC), after the command of "./init_gfs_wrapper"
the model run and immediately it does not continue without any error.
It would be highly appreciated if any one help me in this regard
The log file is as below.
[code][/code]
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PATH=/home/pegahfar/HWRF/hwrfrun/exec:/home/pegahfar/HWRF/hwrfrun/nwport/util/exec::.:/home/pegahfar/HWRF/Dependencies/bin:/opt/intel/advisor_2018.1.0.523188/bin64:/opt/intel/vtune_amplifier_2018.1.0.529789/bin64:/opt/intel/inspector_2018.1.1.530092/bin64:/opt/intel/itac/2018.1.016/intel64/bin:/opt/intel/itac/2018.1.016/intel64/bin:/bin/intel64:/opt/intel/compilers_and_libraries_2018.1.148/linux/bin/intel64:/opt/intel/compilers_and_libraries_2018.1.148/linux/mpi/intel64/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/pegahfar/.local/bin:/home/pegahfar/bin:/opt/intel/parallel_studio_xe_2018.1.035/bin:/home/pegahfar/HWRF/hwrfrun/nwport/util/exec
++ set -u
+ exec /home/pegahfar/HWRF/hwrfrun/scripts/exhwrf_init.py
09/22 14:05:30.398 dbn_alert (dbnalert.py:170) INFO: RUN_ENVIR=EMC is not "NCO". Disabling DBN alerts.
09/22 14:05:30.398 dbn_alert (dbnalert.py:186) WARNING: DBNROOT is unset. Disabling DBN alerts.
09/22 14:05:30.442 hwrf (launcher.py:394) INFO: Running cycle: 2016100400
09/22 14:05:30.442 hwrf (launcher.py:399) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/tmpvit: read vitals for current cycle
09/22 14:05:30.446 hwrf (launcher.py:404) INFO: Current cycle vitals: NHC 14L MATTHEW 20161004 0000 166N 0746W 015 036 0934 1006 0463 64 028 0297 0185 0167 0222 D 0130 0111 0093 0093 72 260N 0780W 0065 0056 0056 0056
09/22 14:05:30.447 hwrf (launcher.py:407) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/oldvit: read vitals for prior cycle
09/22 14:05:30.447 hwrf (launcher.py:411) INFO: Prior cycle vitals: NHC 14L MATTHEW 20161003 1800 159N 0749W 005 026 0940 1006 0463 62 028 0297 0185 0167 0222 D 0130 0093 0093 0093 72 255N 0765W 0065 0056 0056 0056
09/22 14:05:30.447 hwrf (hwrf_expt.py:538) INFO: Initializing hwrf_expt module...
09/22 14:05:32.067 hwrf (hwrf_expt.py:1002) INFO: Done in hwrf_expt module.
09/22 14:05:32.067 hwrf.gfsinit (init.py:556) WARNING: run_through_anl
09/22 14:05:32.068 hwrf.gfsinit/geogrid (wps.py:615) INFO: Geogrid running in directory: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/wps
09/22 14:05:32.069 hwrf.gfsinit/geogrid (fileop.py:263) INFO: geog-data: remove file
09/22 14:05:32.069 hwrf.gfsinit/geogrid (fileop.py:263) INFO: geogrid.log: remove file
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09/22 14:05:32.085 hwrf.gfsinit/geogrid (fileop.py:263) INFO: geo_nmm.d01.nc: remove file
09/22 14:05:32.085 hwrf.gfsinit/geogrid (fileop.py:263) INFO: geogrid.log.0087: remove file
09/22 14:05:32.085 hwrf.gfsinit/geogrid (fileop.py:263) INFO: geogrid.log.0030: remove file
09/22 14:05:32.086 hwrf.gfsinit/geogrid (fileop.py:263) INFO: geo_nmm_nest.l01.nc: remove file
09/22 14:05:32.086 hwrf.gfsinit/geogrid (fileop.py:263) INFO: geo_nmm_nest.l02.nc: remove file
09/22 14:05:32.086 hwrf.gfsinit/geogrid (wps.py:328) INFO: Link table file GEOGRID.TBL to /home/pegahfar/HWRF/hwrfrun/parm/hwrf_GEOGRID.TBL
09/22 14:05:32.086 hwrf.gfsinit/geogrid (fileop.py:677) INFO: link GEOGRID.TBL -> /home/pegahfar/HWRF/hwrfrun/parm/hwrf_GEOGRID.TBL
09/22 14:05:32.086 hwrf.gfsinit/geogrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:05:32.086 hwrf.gfsinit/geogrid (fileop.py:714) INFO: link tmp.GEOGRID.TBL.2518d501.a25f4119.tmp -> /home/pegahfar/HWRF/hwrfrun/parm/hwrf_GEOGRID.TBL
09/22 14:05:32.086 hwrf.gfsinit/geogrid (fileop.py:723) INFO: rename tmp.GEOGRID.TBL.2518d501.a25f4119.tmp to GEOGRID.TBL
09/22 14:05:32.086 hwrf.gfsinit/geogrid (fileop.py:677) INFO: link geog-data -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf_wps_geo/
09/22 14:05:32.088 hwrf.gfsinit/geogrid (wps.py:634) INFO: gfsinit/geogrid command: exe('/opt/intel/compilers_and_libraries_2018.1.148/linux/mpi/intel64/bin/mpirun')['-np','96','/home/pegahfar/HWRF/hwrfrun/sorc/WPSV3/geogrid.exe'].out('geogrid.log',append=False)
09/22 14:05:32.088 hwrf.gfsinit/geogrid (run.py:296) INFO: Starting: exe('/opt/intel/compilers_and_libraries_2018.1.148/linux/mpi/intel64/bin/mpirun')['-np','96','/home/pegahfar/HWRF/hwrfrun/sorc/WPSV3/geogrid.exe'].out('geogrid.log',append=False)
09/22 14:08:51.337 hwrf.gfsinit/geogrid (run.py:395) INFO: - exit status 0
09/22 14:08:51.337 hwrf.gfsinit/geogrid (wps.py:643) INFO: geogrid.log.00000: does not exist.
09/22 14:08:51.337 hwrf.gfsinit/geogrid (wps.py:649) INFO: geogrid.log.0000: will check for Successful completion
09/22 14:08:51.339 hwrf.gfsinit/geogrid (fileop.py:471) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc: exists, replacing with geo_nmm.d01.nc
09/22 14:08:51.339 hwrf.gfsinit/geogrid (fileop.py:487) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc: move from geo_nmm.d01.nc
09/22 14:08:51.361 hwrf.gfsinit/geogrid (wps.py:448) INFO: geo_nmm.d01.nc: file was moved to destination /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc
09/22 14:08:51.361 hwrf.gfsinit/geogrid (wps.py:451) INFO: geo_nmm.d01.nc: relink from delivered file /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc
09/22 14:08:51.361 hwrf.gfsinit/geogrid (fileop.py:677) INFO: link geo_nmm.d01.nc -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc
09/22 14:08:51.362 hwrf.gfsinit/geogrid (fileop.py:471) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l01.nc: exists, replacing with geo_nmm_nest.l01.nc
09/22 14:08:51.362 hwrf.gfsinit/geogrid (fileop.py:487) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l01.nc: move from geo_nmm_nest.l01.nc
09/22 14:08:51.375 hwrf.gfsinit/geogrid (wps.py:448) INFO: geo_nmm_nest.l01.nc: file was moved to destination /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l01.nc
09/22 14:08:51.375 hwrf.gfsinit/geogrid (wps.py:451) INFO: geo_nmm_nest.l01.nc: relink from delivered file /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l01.nc
09/22 14:08:51.375 hwrf.gfsinit/geogrid (fileop.py:677) INFO: link geo_nmm_nest.l01.nc -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l01.nc
09/22 14:08:51.375 hwrf.gfsinit/geogrid (fileop.py:471) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l02.nc: exists, replacing with geo_nmm_nest.l02.nc
09/22 14:08:51.375 hwrf.gfsinit/geogrid (fileop.py:487) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l02.nc: move from geo_nmm_nest.l02.nc
09/22 14:08:51.389 hwrf.gfsinit/geogrid (wps.py:448) INFO: geo_nmm_nest.l02.nc: file was moved to destination /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l02.nc
09/22 14:08:51.389 hwrf.gfsinit/geogrid (wps.py:451) INFO: geo_nmm_nest.l02.nc: relink from delivered file /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l02.nc
09/22 14:08:51.389 hwrf.gfsinit/geogrid (fileop.py:677) INFO: link geo_nmm_nest.l02.nc -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l02.nc
09/22 14:08:51.402 jlog (datastore.py:1092) INFO: WPS Geogrid completed.
09/22 14:08:51Z NONAME-INFO: WPS Geogrid completed.
09/22 14:08:51.402 hwrf.gfsinit/ungrib (wps.py:1043) INFO: Ungrib starting in /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/wps
09/22 14:08:51.403 hwrf.gfsinit/ungrib (wps.py:328) INFO: Link table file Vtable to /home/pegahfar/HWRF/hwrfrun/parm/hwrf_Vtable_gfs2017
09/22 14:08:51.403 hwrf.gfsinit/ungrib (fileop.py:677) INFO: link Vtable -> /home/pegahfar/HWRF/hwrfrun/parm/hwrf_Vtable_gfs2017
09/22 14:08:51.404 hwrf.gfsinit/ungrib (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:08:51.404 hwrf.gfsinit/ungrib (fileop.py:714) INFO: link tmp.Vtable.d32c67ae.a59e7518.tmp -> /home/pegahfar/HWRF/hwrfrun/parm/hwrf_Vtable_gfs2017
09/22 14:08:51.404 hwrf.gfsinit/ungrib (fileop.py:723) INFO: rename tmp.Vtable.d32c67ae.a59e7518.tmp to Vtable
09/22 14:08:51.404 hwrf.gfsinit/ungrib (wps.py:853) INFO: Need to get input for t-start=datetime.datetime(2016, 10, 4, 0, 0)-datetime.datetime(2016, 10, 4, 0, 0)=datetime.timedelta(0)=hour 0 igribmax=2
09/22 14:08:51.404 hwrf.gfsinit/ungrib (wps.py:814) INFO: Check for dataset=gfs item=gfs_gribA ftime=2016100400 atime=2016100400 in DataCatalog(conf,'comm_hist',2016100400)
09/22 14:08:51.405 hwrf.gfsinit/ungrib (wps.py:824) INFO: Got back: '/home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.pgrb2.0p25.f000'
09/22 14:08:51.405 hwrf.gfsinit/ungrib (wps.py:865) INFO: Input for hour 0 is '/home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.pgrb2.0p25.f000'
09/22 14:08:51.405 hwrf.gfsinit/ungrib (wps.py:814) INFO: Check for dataset=gfs item=gfs_gribA ftime=2016100400 atime=2016100400 in DataCatalog(conf,'comm_hist',2016100400)
09/22 14:08:51.405 hwrf.gfsinit/ungrib (wps.py:824) INFO: Got back: '/home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.pgrb2b.0p25.f000'
09/22 14:08:51.405 hwrf.gfsinit/ungrib (wps.py:889) INFO: Merging GRIB files.
09/22 14:08:51.405 hwrf.gfsinit/ungrib (wps.py:814) INFO: Check for dataset=gfs item=gfs_gribA ftime=2016100400 atime=2016100400 in DataCatalog(conf,'comm_hist',2016100400)
09/22 14:08:51.406 hwrf.gfsinit/ungrib (wps.py:824) INFO: Got back: '/home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.pgrb2.0p25.f000'
09/22 14:08:51.406 hwrf.gfsinit/ungrib (wps.py:814) INFO: Check for dataset=gfs item=gfs_gribA ftime=2016100400 atime=2016100400 in DataCatalog(conf,'comm_hist',2016100400)
09/22 14:08:51.406 hwrf.gfsinit/ungrib (wps.py:824) INFO: Got back: '/home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.pgrb2b.0p25.f000'
09/22 14:08:51.412 hwrf.gfsinit/ungrib (wps.py:909) INFO: 'GRIBFILE.AAA': merge GRIBs for time 0 here
09/22 14:08:51.412 hwrf.gfsinit/ungrib (wps.py:911) INFO: 'GRIBFILE.AAA': copy from '/home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.pgrb2.0p25.f000'
09/22 14:08:51.543 hwrf.gfsinit/ungrib (wps.py:916) INFO: 'GRIBFILE.AAA': copy from '/home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.pgrb2b.0p25.f000'
09/22 14:08:51.543 hwrf.gfsinit/ungrib (wps.py:923) WARNING: /home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.pgrb2b.0p25.f000: ignoring exception
Traceback (most recent call last):
File "/home/pegahfar/HWRF/hwrfrun/ush/hwrf/wps.py", line 917, in get_grib
with open(in2,'rb') as inf2:
IOError: [Errno 2] No such file or directory: '/home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.pgrb2b.0p25.f000'
09/22 14:08:51.562 hwrf.gfsinit/ungrib (wps.py:926) INFO: 'GRIBFILE.AAA': done
09/22 14:08:51.562 hwrf.gfsinit/ungrib (wps.py:941) INFO: Subsetting GRIB files
09/22 14:08:51.590 hwrf.gfsinit/ungrib (wps.py:988) INFO: GRIBFILE.AAA: not subsetting
09/22 14:08:51.590 hwrf.gfsinit/ungrib (wps.py:1057) INFO: gfsinit/ungrib command: exe('/home/pegahfar/HWRF/hwrfrun/sorc/WPSV3/ungrib.exe').out('ungrib.log',append=False)
09/22 14:08:51.590 hwrf.gfsinit/ungrib (run.py:296) INFO: Starting: exe('/home/pegahfar/HWRF/hwrfrun/sorc/WPSV3/ungrib.exe').out('ungrib.log',append=False)
Name of source model =>NCEP GFS Analysis
09/22 14:08:55.197 hwrf.gfsinit/ungrib (run.py:395) INFO: - exit status 0
09/22 14:08:55.198 hwrf.gfsinit/ungrib (wps.py:1076) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/wps/FILE:2016-10-04_00: exists, is non-empty.
09/22 14:08:55.216 jlog (datastore.py:1092) INFO: WPS Ungrib completed
09/22 14:08:55Z NONAME-INFO: WPS Ungrib completed
09/22 14:08:55.217 hwrf.gfsinit/metgrid (wps.py:1163) INFO: WPS Metgrid running in dir: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/wps
09/22 14:08:55.219 hwrf.gfsinit/metgrid (wps.py:268) INFO: Not linking geogrid inputs. I hope you already ran geogrid in this directory.
09/22 14:08:55.219 hwrf.gfsinit/metgrid (wps.py:328) INFO: Link table file METGRID.TBL to /home/pegahfar/HWRF/hwrfrun/parm/hwrf_METGRID.TBL
09/22 14:08:55.219 hwrf.gfsinit/metgrid (fileop.py:677) INFO: link METGRID.TBL -> /home/pegahfar/HWRF/hwrfrun/parm/hwrf_METGRID.TBL
09/22 14:08:55.219 hwrf.gfsinit/metgrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:08:55.219 hwrf.gfsinit/metgrid (fileop.py:714) INFO: link tmp.METGRID.TBL.d59ad8a3.f6579e05.tmp -> /home/pegahfar/HWRF/hwrfrun/parm/hwrf_METGRID.TBL
09/22 14:08:55.220 hwrf.gfsinit/metgrid (fileop.py:723) INFO: rename tmp.METGRID.TBL.d59ad8a3.f6579e05.tmp to METGRID.TBL
09/22 14:08:55.220 hwrf.gfsinit/metgrid (wps.py:1178) INFO: gfsinit/metgrid command: exe('/opt/intel/compilers_and_libraries_2018.1.148/linux/mpi/intel64/bin/mpirun')['-np','96','/home/pegahfar/HWRF/hwrfrun/sorc/WPSV3/metgrid.exe'].out('metgrid.log',append=False)
09/22 14:08:55.221 hwrf.gfsinit/metgrid (run.py:296) INFO: Starting: exe('/opt/intel/compilers_and_libraries_2018.1.148/linux/mpi/intel64/bin/mpirun')['-np','96','/home/pegahfar/HWRF/hwrfrun/sorc/WPSV3/metgrid.exe'].out('metgrid.log',append=False)
09/22 14:09:27.902 hwrf.gfsinit/metgrid (run.py:395) INFO: - exit status 0
09/22 14:09:27.902 hwrf.gfsinit/metgrid (wps.py:1182) INFO: 2016-10-04 00:00:00: deliver products for this time.
09/22 14:09:27.903 hwrf.gfsinit/metgrid (fileop.py:467) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/met_nmm.d01.2016-10-04_00_00_00.nc: same as met_nmm.d01.2016-10-04_00_00_00.nc
09/22 14:09:27.919 hwrf.gfsinit/metgrid (fileop.py:677) INFO: link /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/met_nmm.d01.2016-10-04_06_00_00.nc -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/met_nmm.d01.2016-10-04_00_00_00.nc
09/22 14:09:27.919 hwrf.gfsinit/metgrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:09:27.919 hwrf.gfsinit/metgrid (fileop.py:714) INFO: link /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/tmp.met_nmm.d01.2016-10-04_06_00_00.nc.6ba335a.810e7e43.tmp -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/met_nmm.d01.2016-10-04_00_00_00.nc
09/22 14:09:27.920 hwrf.gfsinit/metgrid (fileop.py:723) INFO: rename /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/tmp.met_nmm.d01.2016-10-04_06_00_00.nc.6ba335a.810e7e43.tmp to /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/met_nmm.d01.2016-10-04_06_00_00.nc
09/22 14:09:27.953 jlog (datastore.py:1092) INFO: WPS Metgrid completed
09/22 14:09:27Z NONAME-INFO: WPS Metgrid completed
09/22 14:09:27.954 hwrf.gfsinit/prep_hybrid (prep.py:162) INFO: Within dt epsilon: 2016-10-04 00:00:00 2016-10-04 00:00:00
09/22 14:09:27.954 hwrf.gfsinit/prep_hybrid (prep.py:172) INFO: Check for dataset=gfs item=gfs_sf ftime=2016100400 atime=2016100400 in DataCatalog(conf,'comm_hist',2016100400)
09/22 14:09:27.956 hwrf.gfsinit/prep_hybrid (cd.py:134) INFO: chdir to temporary directory /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/prep_hybrid/2016100400
09/22 14:09:27.956 hwrf.gfsinit/prep_hybrid (prep.py:312) INFO: 20161004-000000: prep in directory /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/prep_hybrid/2016100400
09/22 14:09:27.957 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link geogrid.out -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc
09/22 14:09:27.957 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:09:27.957 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.geogrid.out.1f17b8c4.405ebca6.tmp -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc
09/22 14:09:27.957 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.geogrid.out.1f17b8c4.405ebca6.tmp to geogrid.out
09/22 14:09:27.958 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link fort.44 -> itime
09/22 14:09:27.958 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:09:27.958 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.fort.44.241b9acc.ca67871f.tmp -> itime
09/22 14:09:27.965 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.fort.44.241b9acc.ca67871f.tmp to fort.44
09/22 14:09:27.965 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link fort.11 -> /home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.sf00
09/22 14:09:27.965 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:09:27.965 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.fort.11.12c1e5fa.9b10a135.tmp -> /home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.sf00
09/22 14:09:27.970 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.fort.11.12c1e5fa.9b10a135.tmp to fort.11
09/22 14:09:27.970 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link fort.52 -> ../hwrfbcs00_0
09/22 14:09:27.970 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:09:27.971 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.fort.52.acf9937a.dc69c5d7.tmp -> ../hwrfbcs00_0
09/22 14:09:27.973 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.fort.52.acf9937a.dc69c5d7.tmp to fort.52
09/22 14:09:27.973 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link fort.45 -> dloc
09/22 14:09:27.973 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:09:27.973 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.fort.45.fedc88da.d72de205.tmp -> dloc
09/22 14:09:27.976 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.fort.45.fedc88da.d72de205.tmp to fort.45
09/22 14:09:27.976 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link fort.53 -> ../hwrfinit_0
09/22 14:09:27.976 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:09:27.976 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.fort.53.d5e9aaf1.ee2616c9.tmp -> ../hwrfinit_0
09/22 14:09:27.979 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.fort.53.d5e9aaf1.ee2616c9.tmp to fort.53
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:91) INFO: Requesting stack (max. stack size) soft=6000000000.0 hard=-1
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: stack - max. stack size = 6e+09
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: rss - max. resident set size = (unlimited)
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: fsize - max. file size = (unlimited)
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: nproc - max. processes = 4096
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: core - core file size = 0
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: cpu - cpu usage = (unlimited)
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: aspace - max. address space = (unlimited)
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: memlock - max. locked memory = 65536
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: data - max. heap size = (unlimited)
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: nofile - max. open files = 1024
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (prep.py:381) INFO: Use 24 threads
09/22 14:09:27.980 hwrf.gfsinit/prep_hybrid (run.py:296) INFO: Starting: exe('/home/pegahfar/HWRF/hwrfrun/sorc/hwrf-utilities/exec/hwrf_prep.exe')['288','576','75','0.135','0.135','1536','1010','True'].in('hwrf_na12_mkbnd.parm',string=False).out('prep.log',append=False).err2out().env(MKL_NUM_THREADS=1, KMP_AFFINITY=scatter, KMP_NUM_THREADS=24, OMP_STACKSIZE=4G, OMP_NUM_THREADS=24, IO_FORM=2)
09/22 14:10:23.462 hwrf.gfsinit/prep_hybrid (run.py:395) INFO: - exit status 0
09/22 14:10:23.463 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_utime - time in user mode = 448.557
09/22 14:10:23.463 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_stime - time in system mode = 315.444
09/22 14:10:23.463 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_maxrss - maximum resident set size = 828092
09/22 14:10:23.463 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_ixrss - shared memory size = 0
09/22 14:10:23.463 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_idrss - unshared memory size = 0
09/22 14:10:23.463 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_isrss - unshared stack size = 0
09/22 14:10:23.464 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_minflt - page faults not requiring I/O = 55538
09/22 14:10:23.464 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_majflt - page faults requiring I/O = 74
09/22 14:10:23.464 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_nswap - number of swap outs = 0
09/22 14:10:23.464 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_inblock - block input operations = 9.68842e+06
09/22 14:10:23.464 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_oublock - block output operations = 1.35843e+06
09/22 14:10:23.464 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_msgsnd - messages sent = 0
09/22 14:10:23.464 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_msgrcv - messages received = 0
09/22 14:10:23.464 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_nsignals - signals received = 0
09/22 14:10:23.465 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_nvcsw - voluntary context switches = 44838
09/22 14:10:23.465 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_nivcsw - involuntary context switches = 9.6876e+07
09/22 14:10:23.465 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_walltime - wallclock time = 55.4822
09/22 14:10:23.466 hwrf.gfsinit/prep_hybrid (fileop.py:471) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfinit_0: exists, replacing with ../hwrfinit_0
09/22 14:10:23.466 hwrf.gfsinit/prep_hybrid (fileop.py:487) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfinit_0: move from ../hwrfinit_0
09/22 14:10:23.479 hwrf.gfsinit/prep_hybrid (fileop.py:471) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfbcs_0: exists, replacing with ../hwrfbcs00_0
09/22 14:10:23.479 hwrf.gfsinit/prep_hybrid (fileop.py:487) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfbcs_0: move from ../hwrfbcs00_0
09/22 14:10:23.493 hwrf.gfsinit/prep_hybrid (fileop.py:471) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/prep_0.log: exists, replacing with prep.log
09/22 14:10:23.493 hwrf.gfsinit/prep_hybrid (fileop.py:487) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/prep_0.log: move from prep.log
09/22 14:10:23.493 hwrf.gfsinit/prep_hybrid (cd.py:139) INFO: chdir to old directory /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L
09/22 14:10:23.493 hwrf.gfsinit/prep_hybrid (cd.py:174) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/prep_hybrid/2016100400: not deleting temporary directory
09/22 14:10:23.494 hwrf.gfsinit/prep_hybrid (prep.py:162) INFO: Within dt epsilon: 2016-10-04 00:00:00 2016-10-04 00:00:00
09/22 14:10:23.494 hwrf.gfsinit/prep_hybrid (prep.py:172) INFO: Check for dataset=gfs item=gfs_sf ftime=2016100400 atime=2016100400 in DataCatalog(conf,'comm_hist',2016100400)
09/22 14:10:23.495 hwrf.gfsinit/prep_hybrid (cd.py:134) INFO: chdir to temporary directory /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/prep_hybrid/2016100406
09/22 14:10:23.495 hwrf.gfsinit/prep_hybrid (prep.py:312) INFO: 20161004-060000: prep in directory /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/prep_hybrid/2016100406
09/22 14:10:23.495 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link geogrid.out -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc
09/22 14:10:23.495 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:10:23.495 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.geogrid.out.c05c5854.5ca0f8e1.tmp -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc
09/22 14:10:23.496 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.geogrid.out.c05c5854.5ca0f8e1.tmp to geogrid.out
09/22 14:10:23.496 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link fort.44 -> itime
09/22 14:10:23.496 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:10:23.496 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.fort.44.3be983c7.7eee8501.tmp -> itime
09/22 14:10:23.496 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.fort.44.3be983c7.7eee8501.tmp to fort.44
09/22 14:10:23.496 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link fort.11 -> /home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.sf00
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.fort.11.2096a727.e7e0a770.tmp -> /home/pegahfar/HWRF/MATHEW/gfs.2016100400/gfs.t00z.sf00
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.fort.11.2096a727.e7e0a770.tmp to fort.11
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link fort.52 -> ../hwrfbcs00_1
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.fort.52.d25b349c.589b61a7.tmp -> ../hwrfbcs00_1
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.fort.52.d25b349c.589b61a7.tmp to fort.52
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:677) INFO: link fort.45 -> dloc
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:697) INFO: target exists - using replace_symlink instead
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:714) INFO: link tmp.fort.45.abe24253.94fb3bbd.tmp -> dloc
09/22 14:10:23.497 hwrf.gfsinit/prep_hybrid (fileop.py:723) INFO: rename tmp.fort.45.abe24253.94fb3bbd.tmp to fort.45
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:91) INFO: Requesting stack (max. stack size) soft=6000000000.0 hard=-1
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: stack - max. stack size = 6e+09
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: rss - max. resident set size = (unlimited)
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: fsize - max. file size = (unlimited)
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: nproc - max. processes = 4096
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: core - core file size = 0
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: cpu - cpu usage = (unlimited)
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: aspace - max. address space = (unlimited)
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: memlock - max. locked memory = 65536
09/22 14:10:23.499 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: data - max. heap size = (unlimited)
09/22 14:10:23.500 hwrf.gfsinit/prep_hybrid (rusage.py:139) INFO: nofile - max. open files = 1024
09/22 14:10:23.500 hwrf.gfsinit/prep_hybrid (prep.py:374) INFO: No need to run hwrf_prep
09/22 14:10:23.500 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_utime - time in user mode = 0
09/22 14:10:23.500 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_stime - time in system mode = 0
09/22 14:10:23.500 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_maxrss - maximum resident set size = 0
09/22 14:10:23.500 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_ixrss - shared memory size = 0
09/22 14:10:23.500 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_idrss - unshared memory size = 0
09/22 14:10:23.500 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_isrss - unshared stack size = 0
09/22 14:10:23.501 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_minflt - page faults not requiring I/O = 0
09/22 14:10:23.501 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_majflt - page faults requiring I/O = 0
09/22 14:10:23.501 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_nswap - number of swap outs = 0
09/22 14:10:23.501 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_inblock - block input operations = 0
09/22 14:10:23.501 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_oublock - block output operations = 0
09/22 14:10:23.501 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_msgsnd - messages sent = 0
09/22 14:10:23.501 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_msgrcv - messages received = 0
09/22 14:10:23.501 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_nsignals - signals received = 0
09/22 14:10:23.501 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_nvcsw - voluntary context switches = 0
09/22 14:10:23.502 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_nivcsw - involuntary context switches = 0
09/22 14:10:23.502 hwrf.gfsinit/prep_hybrid (rusage.py:260) INFO: ru_walltime - wallclock time = 0.000115871
09/22 14:10:23.502 hwrf.gfsinit/prep_hybrid (fileop.py:471) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfbcs_1: exists, replacing with /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfbcs_0
09/22 14:10:23.503 hwrf.gfsinit/prep_hybrid (fileop.py:510) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfbcs_0: copy to temporary /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/tmp.hwrfbcs_0.part.UyKWrx
09/22 14:10:23.506 hwrf.gfsinit/prep_hybrid (fileop.py:527) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfbcs_0: copy group ID and permissions to /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/tmp.hwrfbcs_0.part.UyKWrx
09/22 14:10:23.506 hwrf.gfsinit/prep_hybrid (fileop.py:543) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfbcs_1: move from /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/tmp.hwrfbcs_0.part.UyKWrx
09/22 14:10:23.522 hwrf.gfsinit/prep_hybrid (cd.py:139) INFO: chdir to old directory /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L
09/22 14:10:23.522 hwrf.gfsinit/prep_hybrid (cd.py:174) INFO: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/prep_hybrid/2016100406: not deleting temporary directory
09/22 14:10:23.522 hwrf.gfsinit/realinit (fcsttask.py:961) WARNING: /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/realinit: directory exists; will delete
09/22 14:10:23.524 hwrf.gfsinit/realinit (cd.py:134) INFO: chdir to temporary directory /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/realinit
09/22 14:10:23.524 hwrf.gfsinit/realinit (fcsttask.py:969) INFO: gfsinit/realinit running in directory /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/gfsinit/realinit
09/22 14:10:23.538 hwrf.gfsinit/realinit (fcsttask.py:807) INFO: Will link WRF fix files from /home/pegahfar/HWRF/hwrfrun/fix/hwrf_eta_micro_lookup.dat to current directory.
09/22 14:10:23.539 hwrf.gfsinit/realinit (fileop.py:677) INFO: link eta_micro_lookup.dat -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf_eta_micro_lookup.dat
09/22 14:10:23.539 hwrf.gfsinit/realinit (fcsttask.py:807) INFO: Will link WRF fix files from /home/pegahfar/HWRF/hwrfrun/fix/hwrf_track to current directory.
09/22 14:10:23.539 hwrf.gfsinit/realinit (fileop.py:677) INFO: link track -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf_track
09/22 14:10:23.539 hwrf.gfsinit/realinit (fcsttask.py:807) INFO: Will link WRF fix files from /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/* to current directory.
09/22 14:10:23.540 hwrf.gfsinit/realinit (fileop.py:677) INFO: link tr67t85 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/tr67t85
09/22 14:10:23.540 hwrf.gfsinit/realinit (fileop.py:677) INFO: link RRTM_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/RRTM_DATA
09/22 14:10:23.540 hwrf.gfsinit/realinit (fileop.py:677) INFO: link LANDUSE.TBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/LANDUSE.TBL
09/22 14:10:23.540 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CAMtr_volume_mixing_ratio.RCP8.5 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CAMtr_volume_mixing_ratio.RCP8.5
09/22 14:10:23.540 hwrf.gfsinit/realinit (fileop.py:677) INFO: link README.fix -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/README.fix
09/22 14:10:23.540 hwrf.gfsinit/realinit (fileop.py:677) INFO: link tr49t67 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/tr49t67
09/22 14:10:23.541 hwrf.gfsinit/realinit (fileop.py:677) INFO: link VEGPARM.TBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/VEGPARM.TBL
09/22 14:10:23.541 hwrf.gfsinit/realinit (fileop.py:677) INFO: link termvels.asc -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/termvels.asc
09/22 14:10:23.541 hwrf.gfsinit/realinit (fileop.py:677) INFO: link README.namelist -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/README.namelist
09/22 14:10:23.541 hwrf.gfsinit/realinit (fileop.py:677) INFO: link kernels.asc_s_0_03_0_9 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/kernels.asc_s_0_03_0_9
09/22 14:10:23.541 hwrf.gfsinit/realinit (fileop.py:677) INFO: link bulkradii.asc_s_0_03_0_9 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/bulkradii.asc_s_0_03_0_9
09/22 14:10:23.541 hwrf.gfsinit/realinit (fileop.py:677) INFO: link RRTM_DATA_DBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/RRTM_DATA_DBL
09/22 14:10:23.541 hwrf.gfsinit/realinit (fileop.py:677) INFO: link RRTMG_LW_DATA_DBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/RRTMG_LW_DATA_DBL
09/22 14:10:23.541 hwrf.gfsinit/realinit (fileop.py:677) INFO: link gribmap.txt -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/gribmap.txt
09/22 14:10:23.542 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CAMtr_volume_mixing_ratio.A1B -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CAMtr_volume_mixing_ratio.A1B
09/22 14:10:23.542 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CLM_DRDSDT0_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CLM_DRDSDT0_DATA
09/22 14:10:23.542 hwrf.gfsinit/realinit (fileop.py:677) INFO: link coeff_q.asc -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/coeff_q.asc
09/22 14:10:23.542 hwrf.gfsinit/realinit (fileop.py:677) INFO: link README.tslist -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/README.tslist
09/22 14:10:23.542 hwrf.gfsinit/realinit (fileop.py:677) INFO: link URBPARM.TBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/URBPARM.TBL
09/22 14:10:23.542 hwrf.gfsinit/realinit (fileop.py:677) INFO: link ETAMPNEW_DATA.expanded_rain_DBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/ETAMPNEW_DATA.expanded_rain_DBL
09/22 14:10:23.542 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CLM_EXT_ICE_DFS_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CLM_EXT_ICE_DFS_DATA
09/22 14:10:23.542 hwrf.gfsinit/realinit (fileop.py:677) INFO: link RRTMG_SW_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/RRTMG_SW_DATA
09/22 14:10:23.542 hwrf.gfsinit/realinit (fileop.py:677) INFO: link ozone_plev.formatted -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/ozone_plev.formatted
09/22 14:10:23.543 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CLM_TAU_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CLM_TAU_DATA
09/22 14:10:23.543 hwrf.gfsinit/realinit (fileop.py:677) INFO: link ETAMPNEW_DATA_DBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/ETAMPNEW_DATA_DBL
09/22 14:10:23.543 hwrf.gfsinit/realinit (fileop.py:677) INFO: link URBPARM_UZE.TBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/URBPARM_UZE.TBL
09/22 14:10:23.543 hwrf.gfsinit/realinit (fileop.py:677) INFO: link grib2map.tbl -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/grib2map.tbl
09/22 14:10:23.543 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CCN_ACTIVATE.BIN -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CCN_ACTIVATE.BIN
09/22 14:10:23.543 hwrf.gfsinit/realinit (fileop.py:677) INFO: link coeff_p.asc -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/coeff_p.asc
09/22 14:10:23.543 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CAMtr_volume_mixing_ratio.RCP6 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CAMtr_volume_mixing_ratio.RCP6
09/22 14:10:23.543 hwrf.gfsinit/realinit (fileop.py:677) INFO: link kernels_z.asc -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/kernels_z.asc
09/22 14:10:23.543 hwrf.gfsinit/realinit (fileop.py:677) INFO: link aerosol_lat.formatted -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/aerosol_lat.formatted
09/22 14:10:23.544 hwrf.gfsinit/realinit (fileop.py:677) INFO: link SOILPARM.TBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/SOILPARM.TBL
09/22 14:10:23.544 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CLM_KAPPA_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CLM_KAPPA_DATA
09/22 14:10:23.544 hwrf.gfsinit/realinit (fileop.py:677) INFO: link ETAMPNEW_DATA.expanded_rain -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/ETAMPNEW_DATA.expanded_rain
09/22 14:10:23.544 hwrf.gfsinit/realinit (fileop.py:677) INFO: link masses.asc -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/masses.asc
09/22 14:10:23.544 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CAMtr_volume_mixing_ratio.RCP4.5 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CAMtr_volume_mixing_ratio.RCP4.5
09/22 14:10:23.544 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CLM_ALB_ICE_DRC_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CLM_ALB_ICE_DRC_DATA
09/22 14:10:23.544 hwrf.gfsinit/realinit (fileop.py:677) INFO: link MPTABLE.TBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/MPTABLE.TBL
09/22 14:10:23.544 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CLM_ALB_ICE_DFS_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CLM_ALB_ICE_DFS_DATA
09/22 14:10:23.544 hwrf.gfsinit/realinit (fileop.py:677) INFO: link co2_trans -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/co2_trans
09/22 14:10:23.545 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CLM_ASM_ICE_DFS_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CLM_ASM_ICE_DFS_DATA
09/22 14:10:23.545 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CLM_EXT_ICE_DRC_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CLM_EXT_ICE_DRC_DATA
09/22 14:10:23.545 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CAM_ABS_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CAM_ABS_DATA
09/22 14:10:23.545 hwrf.gfsinit/realinit (fileop.py:677) INFO: link capacity.asc -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/capacity.asc
09/22 14:10:23.545 hwrf.gfsinit/realinit (fileop.py:677) INFO: link ozone.formatted -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/ozone.formatted
09/22 14:10:23.545 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CAM_AEROPT_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CAM_AEROPT_DATA
09/22 14:10:23.545 hwrf.gfsinit/realinit (fileop.py:677) INFO: link aerosol_lon.formatted -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/aerosol_lon.formatted
09/22 14:10:23.546 hwrf.gfsinit/realinit (fileop.py:677) INFO: link constants.asc -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/constants.asc
09/22 14:10:23.546 hwrf.gfsinit/realinit (fileop.py:677) INFO: link ozone_lat.formatted -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/ozone_lat.formatted
09/22 14:10:23.546 hwrf.gfsinit/realinit (fileop.py:677) INFO: link RRTMG_LW_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/RRTMG_LW_DATA
09/22 14:10:23.546 hwrf.gfsinit/realinit (fileop.py:677) INFO: link wind-turbine-1.tbl -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/wind-turbine-1.tbl
09/22 14:10:23.546 hwrf.gfsinit/realinit (fileop.py:677) INFO: link aerosol.formatted -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/aerosol.formatted
09/22 14:10:23.546 hwrf.gfsinit/realinit (fileop.py:677) INFO: link RRTMG_SW_DATA_DBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/RRTMG_SW_DATA_DBL
09/22 14:10:23.546 hwrf.gfsinit/realinit (fileop.py:677) INFO: link GENPARM.TBL -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/GENPARM.TBL
09/22 14:10:23.547 hwrf.gfsinit/realinit (fileop.py:677) INFO: link tr49t85 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/tr49t85
09/22 14:10:23.547 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CLM_ASM_ICE_DRC_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CLM_ASM_ICE_DRC_DATA
09/22 14:10:23.547 hwrf.gfsinit/realinit (fileop.py:677) INFO: link bulkdens.asc_s_0_03_0_9 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/bulkdens.asc_s_0_03_0_9
09/22 14:10:23.547 hwrf.gfsinit/realinit (fileop.py:677) INFO: link ETAMPNEW_DATA -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/ETAMPNEW_DATA
09/22 14:10:23.547 hwrf.gfsinit/realinit (fileop.py:677) INFO: link aerosol_plev.formatted -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/aerosol_plev.formatted
09/22 14:10:23.547 hwrf.gfsinit/realinit (fileop.py:677) INFO: link CAMtr_volume_mixing_ratio.A2 -> /home/pegahfar/HWRF/hwrfrun/fix/hwrf-wrf/CAMtr_volume_mixing_ratio.A2
09/22 14:10:23.548 hwrf.gfsinit/realinit (fcsttask.py:445) INFO: Look for input of type prep with kwargs={'times': [datetime.datetime(2016, 10, 4, 0, 0), datetime.datetime(2016, 10, 4, 6, 0)]}
09/22 14:10:23.548 hwrf.gfsinit/realinit (fcsttask.py:452) INFO: Check <hwrf.fcsttask.Prep2WRF object at 0x7ff8cab414d0> for input of type prep
09/22 14:10:23.548 hwrf.gfsinit/realinit (fcsttask.py:341) INFO: Look for prep at time 0
09/22 14:10:23.548 hwrf.gfsinit/realinit (fileop.py:677) INFO: link fort.900 -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfinit_0
09/22 14:10:23.548 hwrf.gfsinit/realinit (fcsttask.py:341) INFO: Look for prep at time 1
09/22 14:10:23.548 hwrf.gfsinit/realinit (fileop.py:677) INFO: link fort.901 -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/prep_hybrid/hwrfbcs_1
09/22 14:10:23.548 hwrf.gfsinit/realinit (fcsttask.py:461) INFO: Found input type 'prep' in inputter #1 (<hwrf.fcsttask.Prep2WRF object at 0x7ff8cab414d0>)
09/22 14:10:23.549 hwrf.gfsinit/realinit (fcsttask.py:445) INFO: Look for input of type geogrid with kwargs={'domain': <WRFDomain name=moad>}
09/22 14:10:23.549 hwrf.gfsinit/realinit (fcsttask.py:452) INFO: Check <hwrf.fcsttask.Geog2WRF object at 0x7ff8cab41490> for input of type geogrid
09/22 14:10:23.549 hwrf.gfsinit/realinit (fileop.py:677) INFO: link geo_nmm.d01.nc -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm.d01.nc
09/22 14:10:23.549 hwrf.gfsinit/realinit (fcsttask.py:461) INFO: Found input type 'geogrid' in inputter #1 (<hwrf.fcsttask.Geog2WRF object at 0x7ff8cab41490>)
09/22 14:10:23.549 hwrf.gfsinit/realinit (fcsttask.py:445) INFO: Look for input of type geogrid with kwargs={'domain': <WRFDomain name=storm1outer>}
09/22 14:10:23.549 hwrf.gfsinit/realinit (fcsttask.py:452) INFO: Check <hwrf.fcsttask.Geog2WRF object at 0x7ff8cab41490> for input of type geogrid
09/22 14:10:23.550 hwrf.gfsinit/realinit (fileop.py:677) INFO: link geo_nmm_nest.l01.nc -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l01.nc
09/22 14:10:23.550 hwrf.gfsinit/realinit (fcsttask.py:461) INFO: Found input type 'geogrid' in inputter #1 (<hwrf.fcsttask.Geog2WRF object at 0x7ff8cab41490>)
09/22 14:10:23.550 hwrf.gfsinit/realinit (fcsttask.py:445) INFO: Look for input of type geogrid with kwargs={'domain': <WRFDomain name=storm1inner>}
09/22 14:10:23.550 hwrf.gfsinit/realinit (fcsttask.py:452) INFO: Check <hwrf.fcsttask.Geog2WRF object at 0x7ff8cab41490> for input of type geogrid
09/22 14:10:23.550 hwrf.gfsinit/realinit (fileop.py:677) INFO: link geo_nmm_nest.l02.nc -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/geo_nmm_nest.l02.nc
09/22 14:10:23.551 hwrf.gfsinit/realinit (fcsttask.py:461) INFO: Found input type 'geogrid' in inputter #1 (<hwrf.fcsttask.Geog2WRF object at 0x7ff8cab41490>)
09/22 14:10:23.551 hwrf.gfsinit/realinit (fcsttask.py:445) INFO: Look for input of type metgrid with kwargs={'ftime': datetime.datetime(2016, 10, 4, 0, 0)}
09/22 14:10:23.551 hwrf.gfsinit/realinit (fcsttask.py:452) INFO: Check <hwrf.fcsttask.Met2WRF object at 0x7ff8cab41410> for input of type metgrid
09/22 14:10:23.551 hwrf.gfsinit/realinit (fileop.py:677) INFO: link met_nmm.d01.2016-10-04_00_00_00.nc -> /home/pegahfar/HWRF/output/pytmp/hwrfrun/2016100400/14L/intercom/gfsinit/wps/met_nmm.d01.2016-10-04_00_00_00.nc
09/22 14:10:23.552 hwrf.gfsinit/realinit (fcsttask.py:461) INFO: Found input type 'metgrid' in inputter #1 (<hwrf.fcsttask.Met2WRF object at 0x7ff8cab41410>)
09/22 14:10:23.552 hwrf.gfsinit/realinit (run.py:296) INFO: Starting: exe('/home/pegahfar/HWRF/hwrfrun/sorc/hwrf-utilities/exec/hwrf_metgrid_levels.exe')['met_nmm.d01.2016-10-04_00_00_00.nc']
09/22 14:10:23.552 hwrf.gfsinit/realinit (run.py:297) INFO: - and will capture output.
09/22 14:10:23.573 hwrf.gfsinit/realinit (run.py:296) INFO: Starting: exe('/home/pegahfar/HWRF/hwrfrun/sorc/hwrf-utilities/exec/hwrf_metgrid_levels.exe')['met_nmm.d01.2016-10-04_00_00_00.nc','num_sm_levels']
09/22 14:10:23.573 hwrf.gfsinit/realinit (run.py:297) INFO: - and will capture output.
09/22 14:10:23.599 hwrf.gfsinit/realinit (run.py:296) INFO: Starting: exe('/home/pegahfar/HWRF/hwrfrun/sorc/hwrf-utilities/exec/hwrf_metgrid_levels.exe')['met_nmm.d01.2016-10-04_00_00_00.nc','num_st_levels']
09/22 14:10:23.599 hwrf.gfsinit/realinit (run.py:297) INFO: - and will capture output.
09/22 14:10:23.625 hwrf.gfsinit/realinit (wrf.py:1151) INFO: Have 32 levels, 4 soil levels (m=4 t=4).
09/22 14:10:23.632 hwrf.gfsinit/realinit (run.py:296) INFO: Starting: exe('/home/pegahfar/HWRF/hwrfrun/sorc/hwrf-utilities/exec/hwrf_swcorner_dynamic.exe').in('AL',string=True)
pegahfar_naf
 
Posts: 2
Joined: Sat Sep 29, 2018 9:10 am

Re: HWRF run strop without any error

Postby kwthomas » Tue Oct 02, 2018 4:10 pm

Hi...

One reason for a program to abruptly die and leave no errors is if running the code would run the computer out
of memory. Running a computer out of memory, without anything catching the problem, can cause a computer
to hang or crash. In either case, a reboot would be required.

Modern systems run what is called an OOM (Out of Memory) daemon process. When it detects the computer
is about to run out of memory, it will search and send SIGKILL (kill -9) to the largest memory usage processess.
This usually doesn't leave a trail of anything, except perhaps a non-zero exit status. System logs *will* have
a message. If you are on a UNIX/LINUX system, you can do a "dmesg" and look for this action. On newer
systems, you can use "dmesg -T", which gives timestamps.

Anything in the WRF family can trigger an OOM scenerio.
Kevin W. Thomas
Center for Analysis and Prediction of Storms
University of Oklahoma
kwthomas
 
Posts: 219
Joined: Thu Aug 07, 2008 6:53 pm


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