No Executables, Fatal Errors With module_cu_g3.mod, Etc

All things involving the setup (compiling, NetCDF, etc.) of the WRF Model itself.

Re: No Executables, Fatal Errors With module_cu_g3.mod, Etc

Postby bijayguha » Sat May 11, 2019 11:01 am

And my configure file


# configure.wrf
#
# This file was automatically generated by the configure script in the
# top level directory. You may make changes to the settings in this
# file but be aware they will be overwritten each time you run configure.
# Ordinarily, it is necessary to run configure once, when the code is
# first installed.
#
# To permanently change options, change the settings for your platform
# in the file arch/configure.defaults then rerun configure.
#
SHELL = /bin/sh
DEVTOP = `pwd`
LIBINCLUDE = .
.SUFFIXES: .F .i .o .f90 .c

#### Get core settings from environment (set in compile script)
#### Note to add a core, this has to be added to.

COREDEFS = -DEM_CORE=$(WRF_EM_CORE) \
-DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 \
-DCOAMPS_CORE=$(WRF_COAMPS_CORE) \
-DDA_CORE=$(WRF_DA_CORE) \
-DEXP_CORE=$(WRF_EXP_CORE)

#### Single location for defining total number of domains. You need
#### at least 1 + 2*(number of total nests). For example, 1 coarse
#### grid + three fine grids = 1 + 2(3) = 7, so MAX_DOMAINS=7.

MAX_DOMAINS = 21

#### DM buffer length for the configuration flags.

CONFIG_BUF_LEN = 32768

#### Size of bitmasks (in 4byte integers) of stream masks for WRF I/O

MAX_HISTORY = 25

IWORDSIZE = 4
DWORDSIZE = 8
LWORDSIZE = 4

##############################################################################
#### The settings in this section are defaults that may be overridden by the
#### architecture-specific settings in the next section.
##############################################################################

##############################################################################
#### NOTE: Do not modify these default values here. To override these
#### values, make changes after "Architecture specific settings".
##############################################################################

#### Native size (in bytes) of Fortran REAL data type on this architecture ####
#### Note: to change real wordsize (for example, to promote REALs from
#### 4-byte to 8-byte), modify the definition of RWORDSIZE in the
#### section following "Architecture specific settings". Do not
#### change NATIVE_RWORDSIZE as is it architecture-specific.
NATIVE_RWORDSIZE = 4

#### Default sed command and script for Fortran source files ####
#SED_FTN = sed -f $(WRF_SRC_ROOT_DIR)/arch/standard.sed
SED_FTN = $(WRF_SRC_ROOT_DIR)/tools/standard.exe

# Hack to work around $(PWD) not changing during OSF1 build.
# $(IO_GRIB_SHARE_DIR) is reset during the OSF1 build only.
IO_GRIB_SHARE_DIR =

#### ESMF switches ####
#### These are set up by Config.pl ####
# switch to use separately installed ESMF library for coupling: 1==true
ESMF_COUPLING = 0
# select dependences on module_utility.o
ESMF_MOD_DEPENDENCE = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/module_utility.o
# select -I options for external/io_esmf vs. external/esmf_time_f90
ESMF_IO_INC = -I$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90
# select -I options for separately installed ESMF library, if present
ESMF_MOD_INC = $(ESMF_IO_INC)
# select cpp token for external/io_esmf vs. external/esmf_time_f90
ESMF_IO_DEFS =
# select build target for external/io_esmf vs. external/esmf_time_f90
ESMF_TARGET = esmf_time

# ESMFINCLUDEGOESHERE


##############################################################################

LIBWRFLIB = libwrflib.a


#### Architecture specific settings ####

# Settings for x86_64 Linux, gfortran compiler with gcc (serial)
#
DMPARALLEL = 1
OMPCPP = # -D_OPENMP
OMP = # -fopenmp
OMPCC = # -fopenmp
SFC = gfortran
SCC = gcc
CCOMP = gcc
DM_FC = mpif90
DM_CC = mpicc
FC = $(SFC)
CC = $(SCC) -DFSEEKO64_OK
LD = $(FC)
RWORDSIZE = $(NATIVE_RWORDSIZE)
PROMOTION = # -fdefault-real-8 # uncomment manually
ARCH_LOCAL = -DNONSTANDARD_SYSTEM_SUBR
CFLAGS_LOCAL = -w -O3 -c -DLANDREAD_STUB
LDFLAGS_LOCAL =
CPLUSPLUSLIB =
ESMF_LDFLAG = $(CPLUSPLUSLIB)
FCOPTIM = -O2 -ftree-vectorize -ftree-loop-linear -funroll-loops
FCREDUCEDOPT = $(FCOPTIM)
FCNOOPT = -O0
FCDEBUG = # -g $(FCNOOPT)
FORMAT_FIXED = -ffixed-form -cpp
FORMAT_FREE = -ffree-form -ffree-line-length-none -cpp
FCSUFFIX =
BYTESWAPIO = -fconvert=big-endian -frecord-marker=4
FCBASEOPTS_NO_G = -w $(FORMAT_FREE) $(BYTESWAPIO)
FCBASEOPTS = $(FCBASEOPTS_NO_G) $(FCDEBUG)
MODULE_SRCH_FLAG =
TRADFLAG = -traditional
CPP = /lib/cpp -P
AR = ar
ARFLAGS = ru
M4 = m4 -G
RANLIB = ranlib
CC_TOOLS = $(SCC)

###########################################################
######################
# POSTAMBLE

FGREP = fgrep -iq

ARCHFLAGS = $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE) -DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=$(LWORDSIZE) \
$(ARCH_LOCAL) \
$(DA_ARCHFLAGS) \
-DDM_PARALLEL \
-DSTUBMPI \
-DNETCDF \
\
\
-DGRIB2 \
\
\
\
\
\
-DUSE_ALLOCATABLES \
-DGRIB1 \
-DINTIO \
-DLIMIT_ARGS \
-DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
-DMAX_DOMAINS_F=$(MAX_DOMAINS) \
-DMAX_HISTORY=$(MAX_HISTORY) \
-DNMM_NEST=$(WRF_NMM_NEST)
CFLAGS = $(CFLAGS_LOCAL) -DDM_PARALLEL -DSTUBMPI \
ESMF_LIB_FLAGS =
# ESMF 5 -- these are defined in esmf.mk, included above
ESMF_IO_LIB = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
ESMF_IO_LIB_EXT = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
INCLUDE_MODULES = $(MODULE_SRCH_FLAG) \
$(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
-I$(WRF_SRC_ROOT_DIR)/main \
-I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
-I$(WRF_SRC_ROOT_DIR)/external/io_int \
-I$(WRF_SRC_ROOT_DIR)/frame \
-I$(WRF_SRC_ROOT_DIR)/share \
-I$(WRF_SRC_ROOT_DIR)/phys \
-I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
-I$(NETCDFPATH)/include \

REGISTRY = Registry

LIB_BUNDLED = \
$(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5/libfftpack.a \
$(WRF_SRC_ROOT_DIR)/external/io_grib1/libio_grib1.a \
$(WRF_SRC_ROOT_DIR)/external/io_grib_share/libio_grib_share.a \
$(WRF_SRC_ROOT_DIR)/external/io_int/libwrfio_int.a \
$(ESMF_IO_LIB) \
$(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
$(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
$(WRF_SRC_ROOT_DIR)/frame/pack_utils.o

LIB_EXTERNAL = \

LIB = $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL)
LDFLAGS = $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
ENVCOMPDEFS =
WRF_CHEM = 0
CPPFLAGS = $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
NETCDFPATH = /home/maslab-6/BIJAY/Build_WRF/LIBRARIES/netcdf
PNETCDFPATH =

bundled: wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int esmf_time fftpack
external: wrfio_nf wrfio_grib2 $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)

######################
externals: bundled external

gen_comms_serial :
( /bin/rm -f $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c )

module_dm_serial :
( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; cat module_dm_stubs.F >> module_dm.F ; fi )

gen_comms_rsllite :
( if [ ! -e $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ] ; then \
/bin/cp $(WRF_SRC_ROOT_DIR)/tools/gen_comms_warning $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; \
cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/gen_comms.c >> $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; fi )

module_dm_rsllite :
( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )

wrfio_nf :
( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \
make NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
CC="$(SCC)" CFLAGS="$(CFLAGS)" \
FC="$(SFC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_pnf :
( cd $(WRF_SRC_ROOT_DIR)/external/io_pnetcdf ; \
make NETCDFPATH="$(PNETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP) $(ARCHFLAGS)" \
FC="$(FC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_grib_share :
( cd $(WRF_SRC_ROOT_DIR)/external/io_grib_share ; \
make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)

wrfio_grib1 :
( cd $(WRF_SRC_ROOT_DIR)/external/io_grib1 ; \
make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)

wrfio_grib2 :
( cd $(WRF_SRC_ROOT_DIR)/external/io_grib2 ; \
make CC="$(SCC)" CFLAGS="$(CFLAGS) -I/home/maslab-6/BIJAY/Build_WRF/LIBRARIES/grib2/include" RM="$(RM)" RANLIB="$(RANLIB)" \
CPP="$(CPP)" \
FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
FIXED="$(FORMAT_FIXED)" archive)

wrfio_int :
( cd $(WRF_SRC_ROOT_DIR)/external/io_int ; \
make CC="$(CC)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" FGREP="$(FGREP)" \
TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ARCHFLAGS="$(ARCHFLAGS)" all )

esmf_time :
( cd $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 ; \
make FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \
CPP="$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

fftpack :
( cd $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 ; \
make FC="$(SFC)" FFLAGS="$(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

atm_ocn :
( cd $(WRF_SRC_ROOT_DIR)/external/atm_ocn ; \
make CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
CPP="$(CPP)" \
FC="$(DM_FC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
FIXED="$(FORMAT_FIXED)" )

$(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a :
( cd $(WRF_SRC_ROOT_DIR)/external/RSL_LITE ; make CC="$(CC) $(CFLAGS)" \
FC="$(FC) $(FCFLAGS) $(PROMOTION) $(BYTESWAPIO)" \
CPP="$(CPP) -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ;\
$(RANLIB) $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a )

######################
# Macros, these should be generic for all machines

LN = ln -sf
MAKE = make -i -r
RM = rm -f


# These sub-directory builds are identical across all architectures

wrf_ioapi_includes :
( cd $(WRF_SRC_ROOT_DIR)/external/ioapi_share ; \
$(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

wrfio_esmf :
( cd $(WRF_SRC_ROOT_DIR)/external/io_esmf ; \
make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(ESMF_MOD_INC)" \
RANLIB="$(RANLIB)" CPP="$(CPP) $(POUND_DEF) " AR="$(AR)" ARFLAGS="$(ARFLAGS)" )

# There is probably no reason to modify these rules

.F.i:
$(RM) $@
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.F > $@
mv $*.i $(DEVTOP)/pick/$*.f90
cp $*.F $(DEVTOP)/pick

.F.o:
$(RM) $@
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F > $*.bb
$(SED_FTN) $*.bb | $(CPP) > $*.f90
$(RM) $*.b $*.bb
@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
echo COMPILING $*.F for 4DVAR ; \
$(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
mv $*.f90.tmp $*.f90 ; \
fi
if $(FGREP) '!$$OMP' $*.f90 ; then \
if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
$(FC) -o $@ -c $(FCFLAGS) $(OMP) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
else \
if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
$(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
fi


.F.f90:
$(RM) $@
$(SED_FTN) $*.F > $*.b
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b > $@
$(RM) $*.b

.f90.o:
$(RM) $@
$(FC) -o $@ -c $(FCFLAGS) $(PROMOTION) $(FCSUFFIX) $*.f90

setfeenv.o : setfeenv.c
$(RM) $@
$(CCOMP) -o $@ -c $(CFLAGS) $(OMPCC) $*.c

.c.o:
$(RM) $@
$(CC) -o $@ -c $(CFLAGS) $*.c

# A little more adventurous. Allow full opt on
# mediation_integrate.o \
# shift_domain_em.o \
# solve_em.o <-- gets a little kick from SOLVE_EM_SPECIAL too, if defined
# mediation_feedback_domain.o : mediation_feedback_domain.F
# mediation_force_domain.o : mediation_force_domain.F
# mediation_interp_domain.o : mediation_interp_domain.F

# compile these without high optimization to speed compile
convert_nmm.o : convert_nmm.F
init_modules_em.o : init_modules_em.F
input_wrf.o : input_wrf.F
module_io.o : module_io.F
module_comm_dm.o : module_comm_dm.F
module_comm_dm_0.o : module_comm_dm_0.F
module_comm_dm_1.o : module_comm_dm_1.F
module_comm_dm_2.o : module_comm_dm_2.F
module_comm_dm_3.o : module_comm_dm_3.F
module_comm_nesting_dm.o : module_comm_nesting_dm.F
module_configure.o : module_configure.F
module_dm.o : module_dm.F
module_domain.o : module_domain.F
module_domain_type.o : module_domain_type.F
module_alloc_space_0.o : module_alloc_space_0.F
module_alloc_space_1.o : module_alloc_space_1.F
module_alloc_space_2.o : module_alloc_space_2.F
module_alloc_space_3.o : module_alloc_space_3.F
module_alloc_space_4.o : module_alloc_space_4.F
module_alloc_space_5.o : module_alloc_space_5.F
module_alloc_space_6.o : module_alloc_space_6.F
module_alloc_space_7.o : module_alloc_space_7.F
module_alloc_space_8.o : module_alloc_space_8.F
module_alloc_space_9.o : module_alloc_space_9.F
module_tiles.o : module_tiles.F
module_fddaobs_rtfdda.o : module_fddaobs_rtfdda.F
module_initialize.o : module_initialize.F
module_physics_init.o : module_physics_init.F
module_initialize_b_wave.o : module_initialize_b_wave.F
module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
module_initialize_real.o : module_initialize_real.F
module_initialize_real.o: module_initialize_real.F
module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
module_integrate.o : module_integrate.F
module_io_mm5.o : module_io_mm5.F
module_io_wrf.o : module_io_wrf.F
module_si_io.o : module_si_io.F
module_state_description.o : module_state_description.F
output_wrf.o : output_wrf.F
solve_interface.o : solve_interface.F
start_domain.o : start_domain.F
start_domain_nmm.o : start_domain_nmm.F
start_em.o : start_em.F
wrf_bdyin.o : wrf_bdyin.F
wrf_bdyout.o : wrf_bdyout.F
wrf_ext_read_field.o : wrf_ext_read_field.F
wrf_ext_write_field.o : wrf_ext_write_field.F
wrf_fddaobs_in.o : wrf_fddaobs_in.F
wrf_histin.o : wrf_histin.F
wrf_histout.o : wrf_histout.F
wrf_inputin.o : wrf_inputin.F
wrf_inputout.o : wrf_inputout.F
wrf_restartin.o : wrf_restartin.F
wrf_restartout.o : wrf_restartout.F
wrf_tsin.o : wrf_tsin.F
nl_get_0_routines.o : nl_get_0_routines.F
nl_get_1_routines.o : nl_get_1_routines.F
nl_set_0_routines.o : nl_set_0_routines.F
nl_set_1_routines.o : nl_set_1_routines.F

convert_nmm.o \
init_modules_em.o \
module_dm.o \
module_fddaobs_rtfdda.o \
module_initialize.o \
module_initialize_b_wave.o \
module_initialize_hill2d_x.o \
module_initialize_quarter_ss.o \
module_initialize_real.o \
module_initialize_squall2d_x.o \
module_initialize_squall2d_y.o \
module_integrate.o \
module_io_mm5.o \
module_io_wrf.o \
module_si_io.o \
module_tiles.o \
output_wrf.o \
solve_interface.o \
start_domain.o \
start_domain_nmm.o \
shift_domain_nmm.o \
start_em.o \
wrf_fddaobs_in.o \
wrf_tsin.o :
$(RM) $@
$(SED_FTN) $*.F > $*.b
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b > $*.f90
$(RM) $*.b
@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
echo COMPILING $*.F for 4DVAR ; \
$(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
mv $*.f90.tmp $*.f90 ; \
fi
if $(FGREP) '!$$OMP' $*.f90 ; then \
if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
$(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
else \
if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
$(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
fi

#solve_em.o :
# $(RM) $@
# $(SED_FTN) $*.F > $*.b
# $(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b > $*.f90
# $(RM) $*.b
# $(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $(SOLVE_EM_SPECIAL) $(OMP) $*.f90

module_sf_ruclsm.o : module_sf_ruclsm.F

module_sf_ruclsm.o :
$(RM) $@
$(SED_FTN) $*.F > $*.b
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b > $*.f90
$(RM) $*.b
if $(FGREP) '!$$OMP' $*.f90 ; then \
echo COMPILING $*.F WITH OMP ; \
if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
$(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
else \
if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
$(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
fi

# compile without OMP
input_wrf.o \
module_domain.o \
module_domain_type.o \
module_physics_init.o \
module_io.o \
wrf_bdyin.o \
wrf_bdyout.o \
wrf_ext_read_field.o \
wrf_ext_write_field.o \
wrf_histin.o \
wrf_histout.o \
wrf_inputin.o \
wrf_inputout.o \
wrf_restartin.o \
wrf_restartout.o \
module_state_description.o \
module_alloc_space.o \
module_alloc_space_0.o \
module_alloc_space_1.o \
module_alloc_space_2.o \
module_alloc_space_3.o \
module_alloc_space_4.o \
module_alloc_space_5.o \
module_alloc_space_6.o \
module_alloc_space_7.o \
module_alloc_space_8.o \
module_alloc_space_9.o \
module_comm_dm.o \
module_comm_dm_0.o \
module_comm_dm_1.o \
module_comm_dm_2.o \
module_comm_dm_3.o \
module_comm_nesting_dm.o \
module_configure.o :
$(RM) $@
$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F > $*.bb
$(SED_FTN) $*.bb | $(CPP) > $*.f90
@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
echo COMPILING $*.F for 4DVAR ; \
$(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
mv $*.f90.tmp $*.f90 ; \
fi
$(RM) $*.b $*.bb
$(FC) -c $(PROMOTION) $(FCSUFFIX) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $*.f90
bijayguha
 
Posts: 8
Joined: Wed Jul 25, 2018 8:18 am

Re: No Executables, Fatal Errors With module_cu_g3.mod, Etc

Postby ad2019 » Wed May 15, 2019 4:31 am

Hi, everybody, I am also suffering from this issues for few days, I am new in wrf and ubuntu both. I have:
1. GNU Fortran (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0
2. gcc (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0 and
3. cpp (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0
Up to configuration everything gone well (without any error), after that when i am trying to compile wrf it shows that "---> Problems building executables, look for errors in the build log <---" and from the compile.log i found following errors:
Error: Size of ‘put’ argument of ‘random_seed’ intrinsic at (1) too small (12/33)
module_cu_g3.f90:3221:41

Fatal Error: Can't open module file ‘module_cu_g3.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_physics_init.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_cumulus_driver.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_first_rk_step_part1.mod’ for reading at (1): No such file or directory
compilation terminated.

collect2: error: ld returned 1 exit status

Please help me.
Thank you...
ad2019
 
Posts: 2
Joined: Wed May 15, 2019 3:10 am

Re: No Executables, Fatal Errors With module_cu_g3.mod, Etc

Postby nefuer » Sat May 18, 2019 7:31 pm

ad2019 wrote:Hi, everybody, I am also suffering from this issues for few days, I am new in wrf and ubuntu both. I have:
1. GNU Fortran (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0
2. gcc (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0 and
3. cpp (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0
Up to configuration everything gone well (without any error), after that when i am trying to compile wrf it shows that "---> Problems building executables, look for errors in the build log <---" and from the compile.log i found following errors:
Error: Size of ‘put’ argument of ‘random_seed’ intrinsic at (1) too small (12/33)
module_cu_g3.f90:3221:41

Fatal Error: Can't open module file ‘module_cu_g3.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_physics_init.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_cumulus_driver.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_first_rk_step_part1.mod’ for reading at (1): No such file or directory
compilation terminated.

collect2: error: ld returned 1 exit status

Please help me.
Thank you...

i am suffering the same errors as you, the same platform, the same compliers, so have you find a solution to that?
nefuer
 
Posts: 2
Joined: Sat May 18, 2019 7:03 pm

Re: No Executables, Fatal Errors With module_cu_g3.mod, Etc

Postby nefuer » Sat May 18, 2019 7:41 pm

ad2019 wrote:Hi, everybody, I am also suffering from this issues for few days, I am new in wrf and ubuntu both. I have:
1. GNU Fortran (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0
2. gcc (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0 and
3. cpp (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0
Up to configuration everything gone well (without any error), after that when i am trying to compile wrf it shows that "---> Problems building executables, look for errors in the build log <---" and from the compile.log i found following errors:
Error: Size of ‘put’ argument of ‘random_seed’ intrinsic at (1) too small (12/33)
module_cu_g3.f90:3221:41

Fatal Error: Can't open module file ‘module_cu_g3.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_physics_init.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_cumulus_driver.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_first_rk_step_part1.mod’ for reading at (1): No such file or directory
compilation terminated.

collect2: error: ld returned 1 exit status

Please help me.
Thank you...
ad2019 wrote:Hi, everybody, I am also suffering from this issues for few days, I am new in wrf and ubuntu both. I have:
1. GNU Fortran (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0
2. gcc (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0 and
3. cpp (Ubuntu 7.4.0-1ubuntu1~18.04) 7.4.0
Up to configuration everything gone well (without any error), after that when i am trying to compile wrf it shows that "---> Problems building executables, look for errors in the build log <---" and from the compile.log i found following errors:
Error: Size of ‘put’ argument of ‘random_seed’ intrinsic at (1) too small (12/33)
module_cu_g3.f90:3221:41

Fatal Error: Can't open module file ‘module_cu_g3.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_physics_init.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_cumulus_driver.mod’ for reading at (1): No such file or directory
compilation terminated.

Fatal Error: Can't open module file ‘module_first_rk_step_part1.mod’ for reading at (1): No such file or directory
compilation terminated.

collect2: error: ld returned 1 exit status

Please help me.
Thank you...

i am suffering the same errors as you for days, the same platform and the same compliers. so have you find a solution, it will be appreciated if you can share.
nefuer
 
Posts: 2
Joined: Sat May 18, 2019 7:03 pm

Re: No Executables, Fatal Errors With module_cu_g3.mod, Etc

Postby Stella@88 » Thu Jul 11, 2019 1:00 pm

kwthomas wrote:Checking 3.8.1 vs 3.9.1.1 for "module_cu_g3.F" shows a difference that is a bug fix for your problem.

See below. Your line number may vary. The key is the "dimension(12)::seed". Replace that with the new
code.

3125c3125,3126
< integer, dimension (12) :: seed
---
> integer, allocatable :: seed(:)
> integer :: seed_size
3135a3137,3139
> call random_seed(size=seed_size) ! Get size of seed array.
> allocate(seed(1:seed_size)) ! Allocate according to returned
size
>


Hi kwthomas,

When I compiled my WRF-Chem version 3.5, I had the same problem. I took your suggestion and modified module_cu_g3.F. Do you have any ideas about the meaning of these change? The reason I asking is that now I can successfully compile my model, however, my simulation results showed overpredicting in PM2.5. The results also showed that something wrong when I add the boundary using mozbc. Do you think the change in the module_cu_g3.F will cause the problem to run the mozbc?

Thank you

Stella
Stella@88
 
Posts: 10
Joined: Wed Feb 27, 2019 12:36 pm

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